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Clean up orography code #987

Merged
merged 57 commits into from
Sep 30, 2024
Merged

Clean up orography code #987

merged 57 commits into from
Sep 30, 2024

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GeorgeGayno-NOAA
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@GeorgeGayno-NOAA GeorgeGayno-NOAA commented Sep 24, 2024 •
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DESCRIPTION OF CHANGES:

Clean up orography code.

  • Remove unused subroutines and logic.
  • Move utility routines to their own module.
  • Move i/o routines to their own module.
  • Remove dependency on IP and SP libraries
  • Add some unit testing.

TESTS CONDUCTED:

  • Compile branch on all Tier 1 machines using Intel (Orion, Jet, Hera, Hercules and WCOSS2). Done using 2de84bc.
  • Compile branch on Hera using GNU. Done using 2de84bc.
  • Compile branch in 'Debug' mode on WCOSS2. Done using 2de84bc.
  • Run unit tests locally on any Tier 1 machine. Done on Hera using 2de84bc. All tests passed, including the three new orog tests. Tests were done using both Intel and Gnu.
  • Run grid_gen consistency tests locally on all Tier 1 machines (using Intel). Done using 2de84bc on Jet, Hera, Hercules, Orion and WCOSS2. All tests passed.

Additional tests:

  • The branch at 2de84bc was compiled in 'debug' mode (using Intel) on WCOSS2. All grid_gen consistency tests failed, but differences were considered 'round-off'.
  • The branch at 2de84bc was compiled in 'release' mode (using Intel) on Hercules. A global uniform C1152 grid was successfully created.
  • The branch at 2de84bc was compiled in 'debug' mode (using Intel) on Hercules. A global uniform C1152 grid was successfully created.
  • The branch at 2de84bc was compiled in 'release' mode using Gnu on Hera. A global uniform C768 grid was successfully created.

DEPENDENCIES:

None.

DOCUMENTATION:

Doxygen was built (with no warnings) on Hera using 2de84bc.

ISSUE:

Fixes #970.

GeorgeGayno-NOAA and others added 30 commits June 27, 2024 19:53
@GeorgeGayno-NOAA
Remove spectral filtering of topography.
a4b7d50 
Fixes ufs-community#970.
@GeorgeGayno-NOAA
Cleanup related to the removal of the spectral terrain
09928c7 
filter step.

Fixes ufs-community#970.
@GeorgeGayno-NOAA
Remove filtered orography array, which is no longer needed.
a350cb0 
Fixes ufs-community#970.
@GeorgeGayno-NOAA
Remove computation of latitude for obsolete gaussian grids.
a052eef 
Fixes ufs-community#970.
@GeorgeGayno-NOAA
More clean up.
14c0faf 
Fixes ufs-community#970.
@GeorgeGayno-NOAA
Remove some logic associated with obsolete routine makeoa3.
c848aeb 
Fixes ufs-community#970.
@GeorgeGayno-NOAA
Remove obsolete routine MAKEOA3 and some functions.
65c9ece 
Fixes ufs-community#970.
@GeorgeGayno-NOAA
Remove obsolete routine makeoa.
40b3114 
Fixes ufs-community#970.
@GeorgeGayno-NOAA
Remove dependency on IPLIB.
54a0a3e 
Fixes ufs-community#970.
@GeorgeGayno-NOAA
Remove obsolete routine MAKEPC.
320b8f8 
Fixes ufs-community#970.
@GeorgeGayno-NOAA
Remove unused routine minmaxj.
b29d87c 
Fixes ufs-community#970
@GeorgeGayno-NOAA
Remove unused function 'spherical_distance'.
5e5503c 
Fixes ufs-community#970.
@GeorgeGayno-NOAA
Add formal 'end' statements for all subroutines and functions.
168c0b3 
Fixes ufs-community#970.
@GeorgeGayno-NOAA
Remove obsolete routine makemt and related logic.
549d2b6 
Fixes ufs-community#970.
@GeorgeGayno-NOAA
Remove read of gaussian ocean mask file, which is not
15bbc85 
used anymore. Remove associated logic.

Fixes ufs-community#970.
@GeorgeGayno-NOAA
Merge branch 'develop' into cleanup/orog3
b88a58e 
Fixes ufs-community#970.
@GeorgeGayno-NOAA
Move read of model 'grid' file in the driver to its own
6b4568e 
subroutine - read_mdl_dims.

Fixes ufs-community#970.
@GeorgeGayno-NOAA
Remove obsolete calls to sp library routines.
2725c69 
Fixes ufs-community#970.
@GeorgeGayno-NOAA
Place logic that find i/j indices of the n/s poles in its
fae9d8c 
own routine.

Fixes ufs-community#970.
@GeorgeGayno-NOAA
Move logic that finds the model points which surround the pole
b149255 
to its own subroutine.

Fixes ufs-community#970.
@GeorgeGayno-NOAA
Remove some unneeded diagnostic print.
c4f10c2 
Fixes ufs-community#970.
@GeorgeGayno-NOAA
Move transpose of orography data to its own routine. Remove
b62cc65 
uneeded routine maxmin. Some general clean up.

Fixes ufs-community#970.
@GeorgeGayno-NOAA
Place read of global mask data and its transpose in
428f6d6 
new routines.

Fixes ufs-community#970.
@GeorgeGayno-NOAA
Remove unused variable GLAT from routine TERSUB. Remove some
67a7df2 
old diagnostic print.

Fixes ufs-community#970.
@GeorgeGayno-NOAA
Move read of RAMP data and the QC of the global data to
030203f 
its own routine.

Fixes ufs-community#970.
@GeorgeGayno-NOAA
Move read of model grid file to its own routine.
dd3dcc4 
Fixes ufs-community#970.
@GeorgeGayno-NOAA
Update argument list for inside_a_polygon to eliminate warnings
d78a42d 
when running in debug mode.

Fixes ufs-community#970.
@GeorgeGayno-NOAA
General clean up.
1b9707b 
Fixes ufs-community#970.
Move logic that removes isolated model points to its
a4d0b30 
own subroutine.

Fixes ufs-community#970.
Clean up print statements and general clean up.
0836573 
Fixes ufs-community#970.
George Gayno and others added 26 commits July 29, 2024 14:54
Move routine latlon2xyz to a new module that will host
b3da945 
most utility routines. Create unit test for that routine.

Fixes ufs-community#970.
Update prolog. Change name of 'merge_file' to a more descriptive
5d93187 
'external_mask_file'.

Fixes ufs-community#970.
Combine routine minmxj and mnmxja into a single routine called
be2a680 
minmax. Write unit test for this new routine.

Fixes ufs-community#970.
Move function get_lat_angle to the orog_utils module and
fde1c2e 
create a unit test for it.

Fixes ufs-community#970.
Move function get_lon_angle to the orog_utils module. Add logic
79426f4 
to prevent divide by zero at poles. Add unit testing for
this function.

Fixes ufs-community#970.
Merge branch 'develop' into cleanup/orog3
0045fcb 
Fixes ufs-community#970.
Merge branch 'develop' into cleanup/orog3
6d317e9 
Fixes ufs-community#970.
Move routines 'timef', 'transpose_mask' and 'spherical_angle'
f94d149 
to orog_utils.F90.

Fixes ufs-community#970.
Move 'transpose_orog' and 'inside_a_polygon' to new
e51a6dc 
module orog_utils.F90.

Fixes ufs-community#970.
Move 'find_poles' and 'find_nearest_pole_points' to
ddc2d1c 
orog_utils.F90.

Fixes ufs-community#970.
Make routine 'latlon2xyz' public so it may be used by the
ddf02d9 
unit tests.

Fixes ufs-community#970.
Move routine 'remove_isolated_pts' to the orog_utils module.
653e704 
Fixes ufs-community#970.
Move routines 'read_global_mask', 'read_global_orog' and
0171cc0 
'qc_orog_by_ramp' to netcdf_io.F90.

Fixes ufs-community#970.
Move routine 'get_index' to module orog_utils.
753a8d7 
Fixes ufs-community#970.
Move function get_xnsum to orog_utils module.
5e0b350 
Fixes ufs-community#970.
Move 'get_xnsum2' and 'get_xnsum3' to orog_utils module.
856a3c7 
Fixes ufs-community#970.
Rename netcdf_io.F90 to a more descriptive io_utils.F90.
d477f17 
Fixes ufs-community#970.
@GeorgeGayno-NOAA
Update the doxygen.
a4b1434 
Fixes ufs-community#970.
Convert io_utils.F90 into a Fortran module.
71b0779 
Fixes ufs-community#970.
Fix intent attribute hc in routine get_xnsum3.
e54edb9 
Fixes ufs-community#970.
Remove space from variable XMSUM_ALL.
a0eb44c 
Regression tests all passed.

Fixes ufs-community#970.
Update driver routine to be Fortran 90.
9b698ea 
Fixes ufs-community#970.
Add intent attributes to all routines in mtnlm7_oclsm.F90.
39db5c5 
Fixes ufs-community#970.
Remove some unused variables.
f8a5626 
Fixes ufs-community#970.
Remove unused logic.
2e84186 
Fixes ufs-community#970.
@GeorgeGayno-NOAA
Remove a debugging compiler flag.
2de84bc 
Fixes ufs-community#970.
@GeorgeGayno-NOAA GeorgeGayno-NOAA marked this pull request as ready for review September 24, 2024 19:58
sanatcumar
sanatcumar approved these changes Sep 26, 2024
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@sanatcumar sanatcumar left a comment

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Compiled and tested the default (C96.mx100) case on Hera. Works as expected .

@GeorgeGayno-NOAA GeorgeGayno-NOAA merged commit 3be97cf into ufs-community:develop Sep 30, 2024
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@sanatcumar sanatcumar sanatcumar approved these changes

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More clean up of orog code
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@GeorgeGayno-NOAA @sanatcumar