Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

new post: anaconda-defaults #49

Merged
merged 27 commits into from
Nov 1, 2024
Merged

new post: anaconda-defaults #49

merged 27 commits into from
Nov 1, 2024

Conversation

ammaraziz
Copy link
Contributor

Suggested reviewers:

@rpetit3
@lskatz
@boulund

Thank you!

@ammaraziz ammaraziz requested a review from a team as a code owner October 14, 2024 23:05
jfy133
jfy133 previously approved these changes Oct 15, 2024
Copy link
Contributor

@jfy133 jfy133 left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Pretty much just formatting! This is great @ammaraziz ! I didn't know about the nodefaults either 👀

_posts/2024-10-15-anaconda-defaults.md Outdated Show resolved Hide resolved
_posts/2024-10-15-anaconda-defaults.md Outdated Show resolved Hide resolved
_posts/2024-10-15-anaconda-defaults.md Outdated Show resolved Hide resolved
_posts/2024-10-15-anaconda-defaults.md Show resolved Hide resolved
_posts/2024-10-15-anaconda-defaults.md Show resolved Hide resolved
_posts/2024-10-15-anaconda-defaults.md Outdated Show resolved Hide resolved
ammaraziz and others added 3 commits October 16, 2024 15:57
changes as suggested by reviewers.
@ammaraziz
Copy link
Contributor Author

ammaraziz commented Oct 16, 2024

TODO for myself:

  1. add info on channel leakage (see this and this and this
  2. add info bug or undocumented 'feature' of conda that implicitly adds defaults. see this and this - thanks to Robert for pointing this out.
  3. Add a brief warning in the tldr + suggestion to use minforge3.

cond -> could spelling mistake
@ammaraziz ammaraziz requested a review from a team as a code owner October 21, 2024 12:03
@ammaraziz
Copy link
Contributor Author

I've tinkered enough... I think.

Ready for editors check :)

hexylena
hexylena previously approved these changes Oct 25, 2024
Copy link
Member

@hexylena hexylena left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Some small technical/formatting patches I'm applying atop but otherwise it looks good! The cover image is cute too!

_posts/2024-10-15-anaconda-defaults.md Outdated Show resolved Hide resolved
_posts/2024-10-15-anaconda-defaults.md Outdated Show resolved Hide resolved
_posts/2024-10-15-anaconda-defaults.md Outdated Show resolved Hide resolved
This required moving it down a bit and ensuring the preview looked good too
hexylena
hexylena previously approved these changes Oct 28, 2024
adding all reviewers, add some links and reformat some sentences
jfy133
jfy133 previously approved these changes Nov 1, 2024
Copy link
Contributor

@jfy133 jfy133 left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Couple of typo fixes and syntax highlighting (if not now, for if it gets implemented in the future)

_posts/2024-10-15-anaconda-defaults.md Outdated Show resolved Hide resolved
- `mamba` is a drop in replacement to `conda`.
- Far more detailed information on all the different channels/distributions [can be found here.](https://bioconda.github.io/faqs.html#what-s-the-difference-between-anaconda-conda-miniconda-mamba-mambaforge-micromamba)

All the hoohah surrounds the [curated Anaconda channels](https://docs.anaconda.com/working-with-conda/reference/default-repositories/), commonly referred to as `defaults` channel. **Note: When installing `conda/miniconda` software, the `defaults` channel is added to your global channels list.** You could inadvertently be using Anaconda services without intending to.
Copy link
Contributor

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

@hexylena does the blog support admonitions? This might be a good sentence to put in warning

_posts/2024-10-15-anaconda-defaults.md Outdated Show resolved Hide resolved
_posts/2024-10-15-anaconda-defaults.md Show resolved Hide resolved
_posts/2024-10-15-anaconda-defaults.md Outdated Show resolved Hide resolved
_posts/2024-10-15-anaconda-defaults.md Outdated Show resolved Hide resolved
_posts/2024-10-15-anaconda-defaults.md Outdated Show resolved Hide resolved
_posts/2024-10-15-anaconda-defaults.md Outdated Show resolved Hide resolved
_posts/2024-10-15-anaconda-defaults.md Outdated Show resolved Hide resolved
_posts/2024-10-15-anaconda-defaults.md Outdated Show resolved Hide resolved
@pmenzel pmenzel merged commit 457178d into ubinfie:main Nov 1, 2024
1 check passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

5 participants