spectral_jaccard_similarity

Dependencies

To create filtered datasets run Bacterial_pipeline_part1.py and Bacterial_pipeline_part2.py.

To use our pre-filtered datasets first run makeFolders.py then run pipeline_wrapper.py. All the code is encapsulated in there.

Name		Name	Last commit message	Last commit date
Latest commit History 5 Commits
datasets		datasets
filtered_fasta		filtered_fasta
groundTruths		groundTruths
Bacterial_pipeline_part1.py		Bacterial_pipeline_part1.py
Bacterial_pipeline_part2.py		Bacterial_pipeline_part2.py
NCTC_ds.txt		NCTC_ds.txt
README.md		README.md
computeJSim.py		computeJSim.py
generateAUCs_pipelined.py		generateAUCs_pipelined.py
generateColProb_pipelined.py		generateColProb_pipelined.py
generateMinHashes_pipelined.py		generateMinHashes_pipelined.py
generateRandReads.py		generateRandReads.py
makeFolders.py		makeFolders.py
pipeline_wrapper.py		pipeline_wrapper.py
runSVDexperiments_pipelined.py		runSVDexperiments_pipelined.py