generate boilerplate for project

Makefile

@@ -1,3 +1,8 @@
+.ONESHELL:
+SHELL = /bin/bash
+CONDA_ENV_PATH=.conda/m1
+CONDA_HOME_PATH=$(HOME)/miniconda3
+
 download:
 	./scripts/download_set1.sh
 	./scripts/download_set2.sh
@@ -6,4 +11,11 @@ count:
 	./scripts/count_data.sh
 
 tree:
-	./scripts/gen_tree.sh data
+	./scripts/gen_tree.sh data
+
+env: 
+	source $(CONDA_HOME_PATH)/bin/activate; conda create -p $(CONDA_ENV_PATH) --no-default-packages --no-deps python=3.10 -y; conda env update -p $(CONDA_ENV_PATH) --file environment.yml
+
+env-reset:
+	rm -rf $(CONDA_ENV_PATH)
+	make env

conda-linux-64.lock

@@ -0,0 +1,127 @@
+# Generated by conda-lock.
+# platform: linux-64
+# input_hash: 5b9b7a165e4d0c38eeaee423c35d36189f40689162dc901e7783513311992f0e
+@EXPLICIT
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+https://conda.anaconda.org/conda-forge/noarch/cachecontrol-with-filecache-0.13.1-pyhd8ed1ab_0.conda#8c4781ca0893cff3a64423954ce234a1
+https://conda.anaconda.org/conda-forge/linux-64/mamba-1.4.9-py310h51d5547_0.conda#b8fd8a60d64cab3269d2d084a415aea4
+https://conda.anaconda.org/conda-forge/noarch/conda-lock-2.1.2-pyhd8ed1ab_0.conda#bd7dc69022079c34f7f5c6f7a1694064

environment.yml

@@ -0,0 +1,14 @@
+name: m1
+channels:
+  # - pytorch
+  - conda-forge
+dependencies:
+  - python=3.10.*
+  - conda-lock
+  - mamba
+  - pip
+  # - pytorch::pytorch=1.11.0
+
+# Non-standard section listing target platforms for conda-lock:
+platforms:
+  - linux-64

pyproject.toml

@@ -0,0 +1,27 @@
+[tool.poetry]
+name = "malicious-code-detection"
+version = "0.1.0"
+description = ""
+authors = ["Truong Hoang <[email protected]>"]
+license = "MIT"
+readme = "README.md"
+packages = [{include = "malicious_code_detection"}]
+
+[tool.poetry.dependencies]
+python = "~3.10"
+slimit = "^0.8.1"
+sklearn = "^0.0.post7"
+matplotlib = "^3.7.2"
+seaborn = "^0.12.2"
+numpy = "^1.25.2"
+pandas = "^2.0.3"
+
+[tool.poetry.group.dev.dependencies]
+pytest = "^7.4.0"
+black = "^23.7.0"
+ruff = "^0.0.284"
+pytest-cov = "^4.1.0"
+
+[build-system]
+requires = ["poetry-core"]
+build-backend = "poetry.core.masonry.api"

scripts/download_set1.sh

@@ -13,9 +13,10 @@ if [[ "$1" == "--redownload" || ! -d "data/set1" ]]; then
 	find . -maxdepth 1 -type f -exec rm -f {} \;
 	find . -maxdepth 1 -mindepth 1 -type d ! -name test ! -name train -exec rm -rf {} \;
 
+	cd ..
 	mkdir all
-	cp -r test/* all
-	cp -r train/* all
+	cp -r set1/test/* all
+	cp -r set1/train/* all
 
 	echo "set1 data downloaded successfully!"
 else

scripts/download_set2.sh

@@ -6,12 +6,14 @@ if [[ "$1" == "--redownload" || ! -d "data/set2" ]]; then
 
     mv JavaScript_Datasets set2
 
-    cd set2
     mkdir all
-    cp -r badjs all
-    cp -r goodjs all
 
-    find . -maxdepth 1 -mindepth 1 -type d ! -name all -exec rm -rf {} \;
+    cp -r set2/badjs all
+    cp -r set2/goodjs all
+
+    cd set2
+
+    find . -maxdepth 1 -mindepth 1 -type d ! -name badjs ! -name goodjs -exec rm -rf {} \;
     find . -maxdepth 1 -type f -exec rm -f {} \;
 
     echo "set2 data downloaded successfully!"