Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

Analysis pipelines for genomic sequencing data

A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)

Differential methylation: Easy, Fast, Identification and ANnoTation

Tracking the evolution of esophageal squamous cell carcinoma under dynamic immune selection by multi-omics sequencing

DNA methylation analysis pipeline for reduced representation bissulfite sequencing data

The process of simulation and calculate some indexes

Analyses combining ATAC-seq, RRBS, and RNA-seq data for purple urchins

R package for DNA Methylation Analysis (and Gene Expression Integration) for Illumina Infinium Array and BS-Seq Data

Code for the crb2a multi omics manuscript