Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
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Updated
Oct 1, 2024 - Nextflow
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips
ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data
A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)
Toolkit for single-cell DNA methylation analysis.
Calculate DNA methylation age using Horvath 2013 method
A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)
An R 📦 for fast and flexible DNA methylation analysis
☄️ Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)
Tool to estimate purity of tumor samples exploiting DNA Methylation data
A chronological age predictor based on DNA methylation
NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)
A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
R package for DNA methylation analysis
A pipeline for the integration of DNA methylation and hydroxymethylation data
A pipeline to identify differentially-methylated regions from whole-genome bisulfite sequencing data
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