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automatic-pipeline

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The goal of the project is to classify the vehicles, count their frequency, track them using unique ID and provide safety measures to the users by flagging the suspicious ones.

  • Updated Nov 21, 2021
  • Python

This is an automatic pipeline for analysis of amplicon sequence data including 16S, 18S and ITS. It wraps QIIME commands and complements them with additional analysis where QIIME is not good at, such as combine multiple sequencing runs, OTU clustering and chimeric removal with UP ARSE, alignment filtering with Gblock, removing Chloroplast sequen…

  • Updated Aug 14, 2018
  • Perl

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