The main aim of this little project is to compare the European allele frequencies of the 1k genomes project with the gnomad frequencies.
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Updated
May 4, 2017 - Python
The main aim of this little project is to compare the European allele frequencies of the 1k genomes project with the gnomad frequencies.
Concordance Validation across Experiments
A Python script that generate population genotype frequency file from 1000G data
GWAS Pre-Processing Pipeline
A pipeline utilizing PCA on 1000 genomes and WGS data from your own samples to determine or validate ancestry of an individual.
Predicting 1000 Genomes population using PCA and a random forest classifier
BIOI500 - Advanced Bioinformatics final project at Loyola University Chicago.
Find risk snp in the LD region of GWAS snps by convolutional neural network
Snakemake workflow to test μ-PBWT against PBWT and Syllable-PBWT
echoverse module: LD downloading and processing
Attain and plot the allele frequency distribution of SNPs based on our merged data from 1000 Genome Project.
A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests on large scale genomic data.
Visualizing Linkage Disequilibrium using 1000 Genomes Data
GTM and t-SNE classification and clustering of 1000 Genomes Project populations
An extendable parser for vcf files written in C++
A PBWT-based light index for UK Biobank scale genotype data.
📙 Explore 1000 Genomes variant data with JavaScript.
This repository provides tools to train and evaluate the Genome-AC-GAN model for generating realistic artificial human genomes.
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