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PCA-Ethnicity-Determination-from-WGS-Data
PCA-Ethnicity-Determination-from-WGS-Data PublicA pipeline utilizing PCA on 1000 genomes and WGS data from your own samples to determine or validate ancestry of an individual.
Shell 2
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SV-calling-with-SpeedSeq
SV-calling-with-SpeedSeq PublicA workflow for using SpeedSeq to align and call SVs from WGS data
Shell 1
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Structural-Variant-Detection-Annotation-and-Plotting-Tools
Structural-Variant-Detection-Annotation-and-Plotting-Tools PublicUseful tools for the analysis of structural variation (SV) in the genome. Includes tools used for SV detection, annotation, and plotting resources.
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Differentially-mutated-genes
Differentially-mutated-genes PublicFisher's tests (with or without) correction for multiple testing on 2x2 contingency tables. Uses a list of genes from two populations to test if any are significantly mutated/disrupted by SVs in onβ¦
R
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