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46 Open 126 Closed
46 Open 126 Closed
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Issues list

cell_type still 'Unknown' after training with scANVI
#259 opened Nov 17, 2024 by robertzeibich
trVAE training on query data indefinitely hang on "Instantiating Dataset"
#258 opened Nov 11, 2024 by li-xuyang28
Cross-species comparison with ExpiMap
#257 opened Nov 8, 2024 by pikapika505
How do I get corrected data for target_condition using scArches?
#255 opened Oct 31, 2024 by tjiyyanki1
query and reference integration fails
#254 opened Oct 29, 2024 by SarahAsbury
1
[Usage Question] Handling Non-Matching Categorical Labels in scArches
#251 opened Sep 13, 2024 by yojetsharma
scPoli training progressively slower with increasing cell number when using raw counts
#250 opened Sep 7, 2024 by gargerd
2
TypeError: __init__() got an unexpected keyword argument 'n_epochs'
#249 opened Sep 2, 2024 by gaoyifei1122
2
Help in understanding condition_key and cell_type_key
#248 opened Aug 30, 2024 by yojetsharma
RuntimeError: indices should be either on cpu or on the same device as the indexed tensor (cpu)
#245 opened Jul 25, 2024 by jayshent
Reproduction issue in treeArches
#244 opened Jul 24, 2024 by hansen7
arm64 osx platform not supported?
#241 opened Jun 5, 2024 by erzakiev
2
Specify the number of cores
#237 opened May 29, 2024 by tvegawaichman
Label transfer without any batch removal in the reference
#236 opened May 27, 2024 by tvegawaichman
AttributeError: module 'scanpy.neighbors' has no attribute 'compute_neighbors_umap'
#234 opened Apr 26, 2024 by bitcometz
PBMC data no longer available
#231 opened Apr 3, 2024 by huananfshi
@chelseabright96
7
Issue in annotating cell types of unlabelled query data by scPoli
#226 opened Feb 7, 2024 by xr-song
1
Choice of reference and query data sets
#225 opened Feb 2, 2024 by hl-xue
1
scPoli Model for Unsupervised Use
#224 opened Jan 30, 2024 by ShreyParikh07
1
Update of conda environment yaml
#217 opened Oct 25, 2023 by wlason
hlca_map_classify.ipynb missing early_stopping_kwarg
#213 opened Oct 11, 2023 by c-westhoven
ImportError: libcudnn.so.8: cannot open shared object file: No such file or directory
#211 opened Sep 1, 2023 by jianrong0520
2
scArches for PeakVI
#209 opened Aug 18, 2023 by simozhou
1
Multiple categorical_covariate_keys not allowed
#208 opened Aug 9, 2023 by Yuki-YqHuang
1
Perform scArches in R using Seurat
#207 opened Jul 28, 2023 by ConDem94
ProTip! Exclude everything labeled bug with -label:bug.