Fix typo #3154
Workflow file for this run
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| # ----------------------------------------------------------------------------- | |
| # BSD 3-Clause License | |
| # | |
| # Copyright (c) 2023-2024, Science and Technology Facilities Council. | |
| # All rights reserved. | |
| # | |
| # Redistribution and use in source and binary forms, with or without | |
| # modification, are permitted provided that the following conditions are met: | |
| # | |
| # * Redistributions of source code must retain the above copyright notice, this | |
| # list of conditions and the following disclaimer. | |
| # | |
| # * Redistributions in binary form must reproduce the above copyright notice, | |
| # this list of conditions and the following disclaimer in the documentation | |
| # and/or other materials provided with the distribution. | |
| # | |
| # * Neither the name of the copyright holder nor the names of its | |
| # contributors may be used to endorse or promote products derived from | |
| # this software without specific prior written permission. | |
| # | |
| # THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS | |
| # "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT | |
| # LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS | |
| # FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE | |
| # COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, | |
| # INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, | |
| # BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; | |
| # LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER | |
| # CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT | |
| # LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN | |
| # ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE | |
| # POSSIBILITY OF SUCH DAMAGE. | |
| # ----------------------------------------------------------------------------- | |
| # Author S. Siso, STFC Daresbury Lab | |
| # This workflow will use a self-hosted runner to perform the more expensive | |
| # integrations tests that are not run on GHA systems. | |
| name: LFRic Integration Tests | |
| on: | |
| push | |
| jobs: | |
| run_if_on_mirror: | |
| if: ${{ github.repository == 'stfc/PSyclone-mirror' }} | |
| runs-on: self-hosted | |
| env: | |
| LFRIC_APPS_REV: 3269 | |
| PYTHON_VERSION: 3.13.0 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: recursive | |
| # This is required to get the commit history for merge commits for | |
| # the ci-skip check below. | |
| fetch-depth: '0' | |
| - name: Check for [skip ci] in commit message | |
| uses: mstachniuk/ci-skip@v1 | |
| with: | |
| # This setting causes the tests to 'fail' if [skip ci] is specified | |
| fail-fast: true | |
| commit-filter: '[skip ci]' | |
| - name: Install dependencies | |
| run: | | |
| # Use a specific version of Python (rather than the system-wide one). | |
| module load python/${PYTHON_VERSION} | |
| python -m venv .runner_venv | |
| . .runner_venv/bin/activate | |
| python -m pip install --upgrade pip | |
| # Uncomment the below to use the submodule version of fparser rather | |
| # than the latest release from pypi. | |
| # pip install external/fparser | |
| pip install .[test] | |
| # PSyclone, compile and run MetOffice gungho_model on GPU | |
| - name: LFRic GungHo with OpenMP offload | |
| run: | | |
| # Set up environment | |
| source /apps/spack/psyclone-spack/spack-repo/share/spack/setup-env.sh | |
| spack load lfric-build-environment%nvhpc | |
| source .runner_venv/bin/activate | |
| export PSYCLONE_LFRIC_DIR=${GITHUB_WORKSPACE}/examples/lfric/scripts | |
| export PSYCLONE_CONFIG_FILE=${PSYCLONE_LFRIC_DIR}/KGOs/lfric_psyclone.cfg | |
| # The LFRic source must be patched to workaround bugs in the NVIDIA | |
| # compiler's namelist handling. | |
| rm -rf ${HOME}/LFRic/gpu_build | |
| mkdir -p ${HOME}/LFRic/gpu_build | |
| cp -r ${HOME}/LFRic/lfric_apps_${LFRIC_APPS_REV} ${HOME}/LFRic/gpu_build/lfric_apps | |
| cp -r ${HOME}/LFRic/lfric_core_50869 ${HOME}/LFRic/gpu_build/lfric | |
| cd ${HOME}/LFRic/gpu_build | |
| patch -p1 < ${PSYCLONE_LFRIC_DIR}/KGOs/lfric_${LFRIC_APPS_REV}_nvidia.patch | |
| # Update the compiler definitions to build for GPU | |
| cp ${PSYCLONE_LFRIC_DIR}/KGOs/nvfortran_acc.mk lfric/infrastructure/build/fortran/nvfortran.mk | |
| cp ${PSYCLONE_LFRIC_DIR}/KGOs/nvc++.mk lfric/infrastructure/build/cxx/. | |
| # Update the PSyclone commands to ensure transformed kernels are written | |
| # to working directory. | |
| cp ${PSYCLONE_LFRIC_DIR}/KGOs/psyclone.mk lfric/infrastructure/build/psyclone/. | |
| # Update dependencies.sh to point to our patched lfric core. | |
| sed -i -e 's/export lfric_core_sources=.*$/export lfric_core_sources\=\/home\/gh_runner\/LFRic\/gpu_build\/lfric/' lfric_apps/dependencies.sh | |
| export LFRIC_DIR=${HOME}/LFRic/gpu_build/lfric_apps | |
| export OPT_DIR=${LFRIC_DIR}/applications/gungho_model/optimisation/psyclone-test | |
| cd ${LFRIC_DIR} | |
| # PSyclone scripts must now be under 'optimisation' and be called 'global.py' | |
| mkdir -p ${OPT_DIR} | |
| cp ${PSYCLONE_LFRIC_DIR}/gpu_offloading.py ${OPT_DIR}/global.py | |
| # Clean previous version and compile again | |
| rm -rf applications/gungho_model/working | |
| LFRIC_OFFLOAD_DIRECTIVES=omp ./build/local_build.py -a gungho_model -p psyclone-test | |
| cd applications/gungho_model/example | |
| cp ${PSYCLONE_LFRIC_DIR}/KGOs/lfric_gungho_configuration_4its.nml configuration.nml | |
| mpirun -n 1 ../bin/gungho_model configuration.nml |& tee output.txt | |
| python ${PSYCLONE_LFRIC_DIR}/compare_ouput.py ${PSYCLONE_LFRIC_DIR}/KGOs/lfric_gungho_configuration_4its_checksums.txt gungho_model-checksums.txt | |
| cat timer.txt | |
| export VAR_TIME=$(grep "gungho_model" timer.txt | cut -d'|' -f5) | |
| export VAR_HALOS=$(grep "gungho_model" halo_calls_counter.txt | cut -d'|' -f5) | |
| echo $GITHUB_REF_NAME $GITHUB_SHA $VAR_TIME $VAR_HALOS >> ${HOME}/store_results/lfric_omp_performance_history | |
| ${HOME}/mongosh-2.1.1-linux-x64/bin/mongosh \ | |
| "mongodb+srv://cluster0.x8ncpxi.mongodb.net/PerformanceMonitoring" \ | |
| --quiet --apiVersion 1 --username ${{ secrets.MONGODB_USERNAME }} \ | |
| --password ${{ secrets.MONGODB_PASSWORD }} \ | |
| --eval 'db.GitHub_CI.insertOne({branch_name: "'"$GITHUB_REF_NAME"'", commit: "'"$GITHUB_SHA"'", | |
| github_job: "'"$GITHUB_RUN_ID"'"-"'"$GITHUB_RUN_ATTEMPT"'", | |
| ci_test: "LFRic OpenMP offloading", lfric_apps_version: '"$LFRIC_APPS_REV"', system: "GlaDos", | |
| compiler:"spack-nvhpc-24.5", date: new Date(), elapsed_time: '"$VAR_TIME"', | |
| num_of_halo_exchanges: '"$VAR_HALOS"'})' | |
| # PSyclone, compile and run MetOffice gungho_model on GPU | |
| - name: LFRic GungHo with OpenACC offload | |
| run: | | |
| # Set up environment | |
| source /apps/spack/psyclone-spack/spack-repo/share/spack/setup-env.sh | |
| spack load lfric-build-environment%nvhpc | |
| source .runner_venv/bin/activate | |
| export PSYCLONE_LFRIC_DIR=${GITHUB_WORKSPACE}/examples/lfric/scripts | |
| export PSYCLONE_CONFIG_FILE=${PSYCLONE_LFRIC_DIR}/KGOs/lfric_psyclone.cfg | |
| # The LFRic source must be patched to workaround bugs in the NVIDIA | |
| # compiler's namelist handling. | |
| rm -rf ${HOME}/LFRic/gpu_build | |
| mkdir -p ${HOME}/LFRic/gpu_build | |
| cp -r ${HOME}/LFRic/lfric_apps_${LFRIC_APPS_REV} ${HOME}/LFRic/gpu_build/lfric_apps | |
| cp -r ${HOME}/LFRic/lfric_core_50869 ${HOME}/LFRic/gpu_build/lfric | |
| cd ${HOME}/LFRic/gpu_build | |
| patch -p1 < ${PSYCLONE_LFRIC_DIR}/KGOs/lfric_${LFRIC_APPS_REV}_nvidia.patch | |
| # Update the compiler definitions to build for GPU | |
| cp ${PSYCLONE_LFRIC_DIR}/KGOs/nvfortran_acc.mk lfric/infrastructure/build/fortran/nvfortran.mk | |
| cp ${PSYCLONE_LFRIC_DIR}/KGOs/nvc++.mk lfric/infrastructure/build/cxx/. | |
| # Update the PSyclone commands to ensure transformed kernels are written | |
| # to working directory. | |
| cp ${PSYCLONE_LFRIC_DIR}/KGOs/psyclone.mk lfric/infrastructure/build/psyclone/. | |
| # Update dependencies.sh to point to our patched lfric core. | |
| sed -i -e 's/export lfric_core_sources=.*$/export lfric_core_sources\=\/home\/gh_runner\/LFRic\/gpu_build\/lfric/' lfric_apps/dependencies.sh | |
| export LFRIC_DIR=${HOME}/LFRic/gpu_build/lfric_apps | |
| export OPT_DIR=${LFRIC_DIR}/applications/gungho_model/optimisation/psyclone-test | |
| cd ${LFRIC_DIR} | |
| # PSyclone scripts must now be under 'optimisation' and be called 'global.py' | |
| mkdir -p ${OPT_DIR} | |
| cp ${PSYCLONE_LFRIC_DIR}/gpu_offloading.py ${OPT_DIR}/global.py | |
| # Clean previous version and compile again | |
| rm -rf applications/gungho_model/working | |
| LFRIC_OFFLOAD_DIRECTIVES=acc ./build/local_build.py -a gungho_model -p psyclone-test | |
| cd applications/gungho_model/example | |
| cp ${PSYCLONE_LFRIC_DIR}/KGOs/lfric_gungho_configuration_4its.nml configuration.nml | |
| mpirun -n 1 ../bin/gungho_model configuration.nml |& tee output.txt | |
| python ${PSYCLONE_LFRIC_DIR}/compare_ouput.py ${PSYCLONE_LFRIC_DIR}/KGOs/lfric_gungho_configuration_4its_checksums.txt gungho_model-checksums.txt | |
| cat timer.txt | |
| export VAR_TIME=$(grep "gungho_model" timer.txt | cut -d'|' -f5) | |
| export VAR_HALOS=$(grep "gungho_model" halo_calls_counter.txt | cut -d'|' -f5) | |
| echo $GITHUB_REF_NAME $GITHUB_SHA $VAR_TIME $VAR_HALOS >> ${HOME}/store_results/lfric_acc_performance_history | |
| ${HOME}/mongosh-2.1.1-linux-x64/bin/mongosh \ | |
| "mongodb+srv://cluster0.x8ncpxi.mongodb.net/PerformanceMonitoring" \ | |
| --quiet --apiVersion 1 --username ${{ secrets.MONGODB_USERNAME }} \ | |
| --password ${{ secrets.MONGODB_PASSWORD }} \ | |
| --eval 'db.GitHub_CI.insertOne({branch_name: "'"$GITHUB_REF_NAME"'", commit: "'"$GITHUB_SHA"'", | |
| github_job: "'"$GITHUB_RUN_ID"'"-"'"$GITHUB_RUN_ATTEMPT"'", | |
| ci_test: "LFRic OpenACC", lfric_apps_version: '"$LFRIC_APPS_REV"', system: "GlaDos", | |
| compiler:"spack-nvhpc-24.5", date: new Date(), elapsed_time: '"$VAR_TIME"', | |
| num_of_halo_exchanges: '"$VAR_HALOS"'})' | |
| # PSyclone, compile and run MetOffice LFRic with 6 MPI ranks | |
| - name: LFRic passthrough (with DistributedMemory) | |
| run: | | |
| # Set up environment | |
| source /apps/spack/psyclone-spack/spack-repo/share/spack/setup-env.sh | |
| spack load lfric-build-environment%gcc@14 | |
| source .runner_venv/bin/activate | |
| export PSYCLONE_LFRIC_DIR=${GITHUB_WORKSPACE}/examples/lfric/scripts | |
| export PSYCLONE_CONFIG_FILE=${PSYCLONE_LFRIC_DIR}/KGOs/lfric_psyclone.cfg | |
| export LFRIC_DIR=${HOME}/LFRic/lfric_apps_${LFRIC_APPS_REV} | |
| cd ${LFRIC_DIR} | |
| # Clean previous version and compile again | |
| rm -rf applications/gungho_model/working | |
| ./build/local_build.py -a gungho_model -v | |
| # Run | |
| cd applications/gungho_model/example | |
| cp ${PSYCLONE_LFRIC_DIR}/KGOs/lfric_gungho_configuration_4its.nml configuration.nml | |
| mpirun -n 6 ../bin/gungho_model configuration.nml |& tee output.txt | |
| python ${PSYCLONE_LFRIC_DIR}/compare_ouput.py ${PSYCLONE_LFRIC_DIR}/KGOs/lfric_gungho_configuration_4its_checksums.txt gungho_model-checksums.txt | |
| cat timer.txt | |
| export VAR_TIME=$(grep "gungho_model" timer.txt | cut -d'|' -f5) | |
| export VAR_HALOS=$(grep "gungho_model" halo_calls_counter.txt | cut -d'|' -f5) | |
| echo $GITHUB_REF_NAME $GITHUB_SHA $VAR_TIME $VAR_HALOS >> ${HOME}/store_results/lfric_passthrough_performance_history | |
| ${HOME}/mongosh-2.1.1-linux-x64/bin/mongosh \ | |
| "mongodb+srv://cluster0.x8ncpxi.mongodb.net/PerformanceMonitoring" \ | |
| --quiet --apiVersion 1 --username ${{ secrets.MONGODB_USERNAME }} \ | |
| --password ${{ secrets.MONGODB_PASSWORD }} \ | |
| --eval 'db.GitHub_CI.insertOne({branch_name: "'"$GITHUB_REF_NAME"'", commit: "'"$GITHUB_SHA"'", | |
| github_job: "'"$GITHUB_RUN_ID"'"-"'"$GITHUB_RUN_ATTEMPT"'", | |
| ci_test: "LFRic Passthrough with DM", lfric_apps_version: '"$LFRIC_APPS_REV"', system: "GlaDos", | |
| compiler:"spack-gfortran-14", date: new Date(), elapsed_time: '"$VAR_TIME"', | |
| num_of_halo_exchanges: '"$VAR_HALOS"'})' | |
| # PSyclone, compile and run MetOffice LFRic with all optimisations and 6 OpenMP threads | |
| - name: LFRic with all transformations | |
| run: | | |
| # Set up environment | |
| source /apps/spack/psyclone-spack/spack-repo/share/spack/setup-env.sh | |
| spack load lfric-build-environment%gcc@14 | |
| source .runner_venv/bin/activate | |
| export PSYCLONE_LFRIC_DIR=${GITHUB_WORKSPACE}/examples/lfric/scripts | |
| export PSYCLONE_CONFIG_FILE=${PSYCLONE_LFRIC_DIR}/KGOs/lfric_psyclone.cfg | |
| export LFRIC_DIR=${HOME}/LFRic/lfric_apps_${LFRIC_APPS_REV} | |
| export OPT_DIR=${LFRIC_DIR}/applications/gungho_model/optimisation/psyclone-test | |
| cd ${LFRIC_DIR} | |
| # PSyclone scripts must now be under 'optimisation' and be called 'global.py' | |
| mkdir -p applications/gungho_model/optimisation/psyclone-test | |
| cp ${PSYCLONE_LFRIC_DIR}/everything_everywhere_all_at_once.py ${OPT_DIR}/global.py | |
| # Clean previous version and compile again | |
| rm -rf applications/gungho_model/working | |
| ./build/local_build.py -a gungho_model -p psyclone-test -v | |
| # Run | |
| cd applications/gungho_model/example | |
| cp ${PSYCLONE_LFRIC_DIR}/KGOs/lfric_gungho_configuration_4its.nml configuration.nml | |
| export OMP_NUM_THREADS=6 | |
| mpirun -n 1 ../bin/gungho_model configuration.nml |& tee output.txt | |
| python ${PSYCLONE_LFRIC_DIR}/compare_ouput.py ${PSYCLONE_LFRIC_DIR}/KGOs/lfric_gungho_configuration_4its_checksums.txt gungho_model-checksums.txt | |
| cat timer.txt | |
| export VAR_TIME=$(grep "gungho_model" timer.txt | cut -d'|' -f5) | |
| export VAR_HALOS=$(grep "gungho_model" halo_calls_counter.txt | cut -d'|' -f5) | |
| echo $GITHUB_REF_NAME $GITHUB_SHA $VAR_TIME $VAR_HALOS >> ${HOME}/store_results/lfric_optimised_performance_history | |
| ${HOME}/mongosh-2.1.1-linux-x64/bin/mongosh \ | |
| "mongodb+srv://cluster0.x8ncpxi.mongodb.net/PerformanceMonitoring" \ | |
| --quiet --apiVersion 1 --username ${{ secrets.MONGODB_USERNAME }} \ | |
| --password ${{ secrets.MONGODB_PASSWORD }} \ | |
| --eval 'db.GitHub_CI.insertOne({branch_name: "'"$GITHUB_REF_NAME"'", commit: "'"$GITHUB_SHA"'", | |
| github_job: "'"$GITHUB_RUN_ID"'"-"'"$GITHUB_RUN_ATTEMPT"'", | |
| ci_test: "LFRic all transformations", lfric_version: '"$LFRIC_APPS_REV"', omp_threads: '"$OMP_NUM_THREADS"', | |
| system: "GlaDos", compiler:"spack-gfortran-14", date: new Date(), elapsed_time: '"$VAR_TIME"', | |
| num_of_halo_exchanges: '"$VAR_HALOS"'})' |