Code to prep and run AlphaFold pulldown.
Steps:
- Prepare fasta file with sequences bait:protein
- Run MSA search with colabfold search functionality
- Run AlphaFold predictions
- Score predictions with DockQ
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AlphaFold pulldown implementation adapted from https://github.com/KosinskiLab/AlphaPulldown
srom/afpd
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AlphaFold pulldown implementation adapted from https://github.com/KosinskiLab/AlphaPulldown
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