COMP: Pre-install ImageJ in notebook CI setup

spatial-image · May 5, 2022 · 4c55e8d · 4c55e8d
1 parent 974cc40
commit 4c55e8d
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/.github/workflows/notebook-test.yml b/.github/workflows/notebook-test.yml
@@ -19,6 +19,8 @@ jobs:
         run: |
           python3 -m pip install --upgrade pip
           python3 -m pip install -e ".[test]"
+          python3 -m pip install pyimagej
+          python3 -c "import imagej; ij = imagej.init('2.5.0'); print(ij.getVersion())"
       - name: Test notebooks
         run: |
-          pytest --nbmake --nbmake-timeout=3000  examples/*ipynb
+          pytest --nbmake --nbmake-timeout=3000  examples/*ipynb