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PACOM (Proteomics Assay COMparator)

• Introduction
• How to start
  • Download
  • System requirements
  • Installation
  • User data folders
  • How to run it
• How to import datasets
  • Importing a dataset
  • Associate MS file and MS Metadata to datasets
  • Table text input file format
• The Mass Spectrometry metadata editor
• How to create a comparison project
  • Definition of a comparison project
  • Save a comparison project
  • Load a comparison project
  • Delete a comparison project
• Data comparison and inspection charts
  • General options
  • Data comparison and Inspection charts
  • General information
  • Comparison level
  • Peptide counting
  • Chart additional options
  • Chart customization
• Chart types
• Filtering datasets
  • FDR filter
  • Score Threshold
  • Occurrence Filter
  • PTM Filter
  • Protein ACC Filter
  • Peptides per protein Filter
  • Peptide Length Filter
  • Peptide Sequence Filter
  • Peptides for MRM filter
• Save datasets as filtered
• Exporting data
  • Exporting data to TSV files
  • Exporting data to PRIDE XML files