Merge pull request #16 from EnSpec/sister-dev

Sister dev
sister-jpl · Apr 25, 2023 · e3c6d79 · e3c6d79
2 parents 3c62580 + 80e8e52
commit e3c6d79
Show file tree

Hide file tree

Showing 15 changed files with 4,757 additions and 922 deletions.
diff --git a/notebooks/sister_production_1_list.csv → ...uction_run_1/sister_production_1_list.csv b/notebooks/sister_production_1_list.csv → ...uction_run_1/sister_production_1_list.csv
diff --git a/...books/sister_algorithm_registration.ipynb → ...run_2/sister_algorithm_registration.ipynb b/...books/sister_algorithm_registration.ipynb → ...run_2/sister_algorithm_registration.ipynb
@@ -10,7 +10,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 10,
+   "execution_count": 1,
    "id": "77b7ab36",
    "metadata": {},
    "outputs": [],
@@ -33,7 +33,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 6,
+   "execution_count": 3,
    "id": "fc0a88bd",
    "metadata": {},
    "outputs": [
@@ -64,31 +64,16 @@
    "id": "af3701f9",
    "metadata": {},
    "source": [
-    "## sister-isofit"
+    "## sister-isofit\n",
+    "https://gitlab.com/geospec/sister-isofit"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 11,
-   "id": "7e280bee",
+   "execution_count": null,
+   "id": "c808c4df",
    "metadata": {},
-   "outputs": [
-    {
-     "name": "stderr",
-     "output_type": "stream",
-     "text": [
-      "/Users/achlus/opt/anaconda3/envs/python38/lib/python3.8/site-packages/urllib3/connectionpool.py:1045: InsecureRequestWarning: Unverified HTTPS request is being made to host 'sister-api.imgspec.org'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/1.26.x/advanced-usage.html#ssl-warnings\n",
-      "  warnings.warn(\n"
-     ]
-    },
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "<Response [200]>\n"
-     ]
-    }
-   ],
+   "outputs": [],
    "source": [
     "isofit_alg_yaml = '../../sister-isofit/algorithm_config.yaml'\n",
     "response =maap.register_algorithm_from_yaml_file(file_path=isofit_alg_yaml)\n",
@@ -107,10 +92,26 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 4,
    "id": "71766904",
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "/Users/achlus/opt/anaconda3/envs/python38/lib/python3.8/site-packages/urllib3/connectionpool.py:1045: InsecureRequestWarning: Unverified HTTPS request is being made to host 'sister-api.imgspec.org'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/1.26.x/advanced-usage.html#ssl-warnings\n",
+      "  warnings.warn(\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "<Response [200]>\n"
+     ]
+    }
+   ],
    "source": [
     "resample_alg_yaml = '../../sister-resample/algorithm_config.yaml'\n",
     "response =maap.register_algorithm_from_yaml_file(file_path=resample_alg_yaml)\n",
@@ -129,26 +130,10 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 62,
+   "execution_count": null,
    "id": "d2e5967d",
    "metadata": {},
-   "outputs": [
-    {
-     "name": "stderr",
-     "output_type": "stream",
-     "text": [
-      "/Users/achlus/opt/anaconda3/envs/python38/lib/python3.8/site-packages/urllib3/connectionpool.py:1045: InsecureRequestWarning: Unverified HTTPS request is being made to host 'sister-api.imgspec.org'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/1.26.x/advanced-usage.html#ssl-warnings\n",
-      "  warnings.warn(\n"
-     ]
-    },
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "<Response [200]>\n"
-     ]
-    }
-   ],
+   "outputs": [],
    "source": [
     "rfl_correct_alg_yaml = '../../sister-reflect_correct/algorithm_config.yaml'\n",
     "response =maap.register_algorithm_from_yaml_file(file_path=rfl_correct_alg_yaml)\n",
@@ -201,17 +186,39 @@
     "response = maap.registerAlgorithm(arg=cwl_workflow_alg)"
    ]
   },
+  {
+   "cell_type": "markdown",
+   "id": "10a70e61",
+   "metadata": {},
+   "source": [
+    "## sister-fractional_cover\n",
+    "https://gitlab.com/geospec/sister-fractional-cover"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "2aaaf956",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "cover_alg_yaml = '../../sister-fractional-cover/algorithm_config.yaml'\n",
+    "response =maap.register_algorithm_from_yaml_file(file_path=cover_alg_yaml)\n",
+    "print(response)"
+   ]
+  },
   {
    "cell_type": "markdown",
    "id": "cf82b772",
    "metadata": {},
    "source": [
-    "## sister-trait_estimate"
+    "## sister-trait_estimate\n",
+    "https://github.com/EnSpec/sister-trait_estimate"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 8,
+   "execution_count": 3,
    "id": "21878d01",
    "metadata": {},
    "outputs": [
@@ -239,16 +246,17 @@
   },
   {
    "cell_type": "markdown",
-   "id": "10a70e61",
+   "id": "7b8024fc",
    "metadata": {},
    "source": [
-    "## sister-fractional_cover"
+    "## sister-grainsize\n",
+    "https://github.com/EnSpec/sister-grainsize"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 12,
-   "id": "2aaaf956",
+   "execution_count": 2,
+   "id": "69a05aa5",
    "metadata": {},
    "outputs": [
     {
@@ -268,23 +276,24 @@
     }
    ],
    "source": [
-    "cover_alg_yaml = '../../sister-fractional-cover/algorithm_config.yaml'\n",
-    "response =maap.register_algorithm_from_yaml_file(file_path=cover_alg_yaml)\n",
+    "grainsize_alg_yaml = '../../sister-grainsize/algorithm_config.yaml'\n",
+    "response =maap.register_algorithm_from_yaml_file(file_path=grainsize_alg_yaml)\n",
     "print(response)"
    ]
   },
   {
    "cell_type": "markdown",
-   "id": "7b8024fc",
+   "id": "a884a7c3",
    "metadata": {},
    "source": [
-    "## sister-grainsize"
+    "## sister-algorithm_router\n",
+    "https://github.com/EnSpec/sister-algorithm_router"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 9,
-   "id": "69a05aa5",
+   "execution_count": 3,
+   "id": "f9486c94",
    "metadata": {},
    "outputs": [
     {
@@ -304,15 +313,15 @@
     }
    ],
    "source": [
-    "grainsize_alg_yaml = '../../sister-grainsize/algorithm_config.yaml'\n",
-    "response =maap.register_algorithm_from_yaml_file(file_path=grainsize_alg_yaml)\n",
+    "router_yaml = '../../sister-algorithm_router/algorithm_config.yaml'\n",
+    "response =maap.register_algorithm_from_yaml_file(file_path=router_yaml)\n",
     "print(response)"
    ]
   },
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "7910942d",
+   "id": "4313aca0",
    "metadata": {},
    "outputs": [],
    "source": []