Merge pull request #67 from jcapriot/prism_cython

Prism cython

.github/workflows/test_with_conda.yml

@@ -39,6 +39,7 @@ jobs:
           matplotlib
           jupyter
           utm
+          numba
           pytest
           pytest-cov
           sphinx
@@ -87,6 +88,7 @@ jobs:
           matplotlib
           jupyter
           utm
+          numba
           pytest
           pytest-cov
           sphinx

.gitignore

@@ -98,7 +98,11 @@ docs/api/generated/*
 
 # Jupyter
 *.ipynb
+
+#Cython generated files
 geoana/kernels/_extensions/rTE.cpp
+geoana/kernels/_extensions/potential_field_prism.c
+geoana/kernels/_extensions/potential_field_prism_api.h
 
 # setuptools_scm
 geoana/version.py

geoana/kernels/_extensions/__init__.py

@@ -0,0 +1,54 @@
+try:
+    # register numba jitable versions of the prism functions
+    # if numba is available (and this module is installed).
+    from numba.extending import (
+        overload,
+        get_cython_function_address
+    )
+    from numba import types
+    import ctypes
+
+    from .potential_field_prism import (
+        prism_f,
+        prism_fz,
+        prism_fzz,
+        prism_fzx,
+        prism_fzy,
+        prism_fzzz,
+        prism_fxxy,
+        prism_fxxz,
+        prism_fxyz,
+    )
+    funcs = [
+        prism_f,
+        prism_fz,
+        prism_fzz,
+        prism_fzx,
+        prism_fzy,
+        prism_fzzz,
+        prism_fxxy,
+        prism_fxxz,
+        prism_fxyz,
+    ]
+
+    def _numba_register_prism_func(prism_func):
+        module = 'geoana.kernels._extensions.potential_field_prism'
+        name = prism_func.__name__
+
+        func_address = get_cython_function_address(module, name)
+        func_type = ctypes.CFUNCTYPE(ctypes.c_double, ctypes.c_double, ctypes.c_double, ctypes.c_double)
+        c_func = func_type(func_address)
+
+        @overload(prism_func)
+        def numba_func(x, y, z):
+            if isinstance(x, types.Float):
+                if isinstance(y, types.Float):
+                    if isinstance(z, types.Float):
+                        def f(x, y, z):
+                            return c_func(x, y, z)
+                        return f
+    for func in funcs:
+        _numba_register_prism_func(func)
+
+except ImportError as err:
+    pass