Jupyter notebook demo of sequgen functionality.
For running locally on Ubuntu:
sudo apt install git
First clone this repository.
git clone https://github.com/sequgen/notebooks.git .
Install the dependencies with
# Create a virtualenv, e.g. with
python3 -m venv env
# activate virtualenv
source env/bin/activate
# make sure to have a recent version of pip
pip install --upgrade pip wheel
# (from the repository root directory)
# install sequgen + jupyter
pip install --requirement requirements.txt
# add the new local environment to jupyter
ipython kernel install --name sequgen-demo --user
Start the notebook server:
jupyter lab
It will open a web browser with the Jupyter Lab environment, in file-browser on left side bar open the notebook (*.ipynb files) of interest. Select the kernel sequgen-demo
to run the notebook.