chore(deps): upgrade project dependencies

Upgrade all project dependencies.

.github/workflows/ci.yml

@@ -15,6 +15,7 @@ jobs:
         python-version:
           - "3.11"
           - "3.12"
+          - "3.13"
     steps:
       - uses: actions/checkout@v4
       - name: Set up project using python ${{ matrix.python-version }}

.pre-commit-config.yaml

@@ -3,7 +3,7 @@
 # See https://pre-commit.com/hooks.html for more hooks
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.6.0
+    rev: v5.0.0
     hooks:
       - id: trailing-whitespace
       - id: end-of-file-fixer
@@ -13,14 +13,14 @@ repos:
       - id: check-yaml
 
   - repo: https://github.com/asottile/pyupgrade
-    rev: v3.16.0
+    rev: v3.19.0
     hooks:
       - id: pyupgrade
         args:
         - --py311-plus
 
   - repo: https://github.com/charliermarsh/ruff-pre-commit
-    rev: v0.5.1
+    rev: v0.7.1
     hooks:
       - id: ruff
         args:

pyproject.toml

@@ -1,7 +1,7 @@
 [build-system]
 build-backend = "setuptools.build_meta"
 requires = [
-    "setuptools~=70.3.0",
+    "setuptools~=75.2.0",
     "setuptools_scm[toml]~=8.1.0",
 ]
 
@@ -24,7 +24,7 @@ classifiers = [
 ]
 dependencies = [
     "typing-extensions>=4.12.2",
-    "sghi-commons @ git+https://github.com/savannahghi/[email protected].0",
+    "sghi-commons @ git+https://github.com/savannahghi/[email protected].1",
 ]
 description = "API specification for components of a simple ETL workflow."
 dynamic = ["version"]
@@ -40,33 +40,33 @@ requires-python = ">=3.11" # Support Python 3.10+.
 
 [project.optional-dependencies]
 dev = [
-    "pre-commit~=3.7.1",
+    "pre-commit~=4.0.1",
 ]
 
 docs = [
-    "furo==2024.5.6",
-    "jaraco.packaging~=10.2.2",
+    "furo==2024.8.6",
+    "jaraco.packaging~=10.2.3",
     "rst.linker~=2.6.0",
-    "Sphinx~=7.3.7",
+    "Sphinx~=8.1.3",
     "sphinx-favicon~=1.0.1",
-    "sphinx-hoverxref~=1.4.0",
+    "sphinx-hoverxref~=1.4.1",
     "sphinx-inline-tabs~=2023.4.21",
-    "sphinx-lint~=0.9.1",
-    "sphinx-notfound-page~=1.0.2",
+    "sphinx-lint~=1.0.0",
+    "sphinx-notfound-page~=1.0.4",
 ]
 
 test = [
-    "coverage~=7.6.0",
+    "coverage~=7.6.4",
     "coveralls~=4.0.1",
     "packaging",
-    "pyright>=1.1.371",
-    "pytest~=8.2.2",
+    "pyright>=1.1.386",
+    "pytest~=8.3.3",
     "pytest-cov~=5.0.0",
     "pytest-forked~=1.6.0",
     "pytest-sugar~=1.0.0",
     "pytest-xdist~=3.6.1",
-    "ruff~=0.5.1",
-    "tox~=4.16.0",
+    "ruff~=0.7.1",
+    "tox~=4.23.2",
     "tox-gh-actions~=3.2.0",
 ]
 
@@ -279,6 +279,63 @@ where = ["src"]
 root = "."
 
 [tool.tox]
+env_list = ["{py311, py312, py313}", "coveralls", "docs", "package"]
+isolated_build = true
+requires = ["tox>=4.16", "tox-uv>=1.15.0"]
+no_package = false
+skip_missing_interpreters = true
+
+[tool.tox.env_run_base]
+# allowlist_externals = ["uv"]
+commands = [
+    ["ruff", "check", "."],
+    ["ruff", "format", "--check", "."],
+    ["pyright", "."],
+    ["coverage", "erase"],
+    ["pytest", { replace = "posargs", default = ["."], extend = true}],
+    ["coverage", "html"],
+]
+deps = ["."]
+description = "test and lint the project"
+download = true
+extras = ["test"]
+set_env ={ PYTHONPATH = "{toxinidir}/src", PYRIGHT_PYTHON_FORCE_VERSION = "latest" }
+
+[tool.tox.env.coveralls]
+# If running outside Github, ensure that the the `COVERALLS_REPO_TOKEN`
+# environment variable is set.
+commands = [["coveralls", "--service=github"]]
+description = "submit coverage results to coverall.io"
+extras = ["test"]
+pass_env = ["COVERALLS_REPO_TOKEN", "GITHUB_*"]
+
+[tool.tox.env.docs]
+changedir = "docs"
+commands = [
+    ["sphinx-build", "-EW", "--keep-going", "-b", "html", ".", "{toxinidir}/docs/build/html"],
+    ["sphinx-lint", "-i", "api"]
+]
+description = "build sphinx documentation"
+extras = ["docs"]
+
+[tool.tox.env.package]
+commands = [
+    ["python", "-c", "import shutil; shutil.rmtree('dist', ignore_errors=True)"],
+    ["python", "-m", "build"]
+]
+depends = ["testenv"]
+deps = ["build"]
+description = "build the library"
+skip_install = true
+
+[tool.tox.gh-actions]
+python = """
+   3.11: py311
+   3.12: py312, coveralls, docs, package
+   3.13: py313
+"""
+
+[tool.tox1]
 legacy_tox_ini = """
     [tox]
     env_list = {py311, py312}, coveralls, docs, package

test/sghi/etl/core_tests.py

@@ -84,7 +84,9 @@ def dispose(self) -> None:
 
 
 @dataclass(frozen=True, slots=True)
-class TestWorkflowDefinition(WorkflowDefinition[Iterable[int], Iterable[str]]):
+class SimpleWorkflowDefinition(
+    WorkflowDefinition[Iterable[int], Iterable[str]],
+):
     """A simple :class:`WorkflowDefinition` implementation."""
 
     @property
@@ -283,7 +285,7 @@ class TestWorkflow(TestCase):
     def setUp(self) -> None:
         super().setUp()
         self._instance: WorkflowDefinition[Iterable[int], Iterable[str]]
-        self._instance = TestWorkflowDefinition()
+        self._instance = SimpleWorkflowDefinition()
 
     def test_epilogue_return_value(self) -> None:
         """The default implementation of