Skip to content

Commit

Permalink
Fixed typo cell annotation notebook
Browse files Browse the repository at this point in the history
  • Loading branch information
PauBadiaM committed Jan 18, 2024
1 parent a5b8170 commit f3bc59b
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion docs/source/notebooks/cell_annotation.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -853,7 +853,7 @@
"## Enrichment with Over Representation Analysis (ORA)\n",
"\n",
"To infer functional enrichment scores we will run the Over Representation Analysis (`ora`) method.\n",
"As input data it accepts an expression matrix (`decoupler.run_ora`) or the results of differential expression analysis (`decoupler.run_ora_df`).\n",
"As input data it accepts an expression matrix (`decoupler.run_ora`) or the results of differential expression analysis (`decoupler.get_ora_df`).\n",
"For the former, by default the top 5% of expressed genes by sample are selected as the set of interest (S*), and for the latter a user-defined\n",
"significance filtering can be used.\n",
"Once we have S*, it builds a contingency table using set operations for each set stored in the gene set resource being used (`net`).\n",
Expand Down

0 comments on commit f3bc59b

Please sign in to comment.