Deprecated kcdf density from gsva fixing numba issue #24
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| name: ci | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| types: [ opened, synchronize, reopened ] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -e {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python: ['3.8', '3.9', '3.10', '3.11', '3.12'] | |
| os: [ubuntu-latest, macos-latest] | |
| env: | |
| OS: ${{ matrix.os }} | |
| PYTHON: ${{ matrix.python }} | |
| MODULE: decoupler | |
| steps: | |
| - name: Check out main | |
| uses: actions/checkout@v4 | |
| - name: Setup Python ${{ matrix.python }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: System dependencies Linux | |
| if: ${{ matrix.os == 'ubuntu-latest' }} | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libcurl4-openssl-dev | |
| - name: System dependencies OSX | |
| if: ${{ matrix.os == 'macos-latest' }} | |
| run: | | |
| brew install openssl | |
| export LDFLAGS="-L/usr/local/opt/openssl@3/lib" | |
| export CPPFLAGS="-I/usr/local/opt/openssl@3/include" | |
| export PKG_CONFIG_PATH="/usr/local/opt/openssl@3/lib/pkgconfig" | |
| - name: Install Poetry | |
| uses: snok/install-poetry@v1 | |
| with: | |
| virtualenvs-create: true | |
| virtualenvs-in-project: true | |
| installer-parallel: true | |
| - name: Load cached venv | |
| id: cached-poetry-dependencies | |
| uses: actions/cache@v4 | |
| with: | |
| path: .venv | |
| key: venv-${{ runner.os }}-${{ matrix.python }}-${{ hashFiles('**/poetry.lock') }} | |
| - name: Install dependencies | |
| if: ${{ steps.cached-poetry-dependencies.outputs.cache-hit != 'true' }} | |
| run: poetry install --no-interaction --no-root | |
| - name: Install library | |
| run: poetry install --no-interaction | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| poetry run flake8 $MODULE --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| poetry run flake8 $MODULE --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Tests and test coverage | |
| if: ${{ github.event_name == 'push' }} | |
| run: | | |
| poetry run pytest --cov --disable-warnings | |
| - name: Tests | |
| if: ${{ github.event_name == 'pull_request' }} | |
| run: | | |
| poetry run pytest --disable-warnings | |
| - name: Upload coverage reports to Codecov | |
| if: ${{ github.event_name == 'push' && matrix.os == 'ubuntu-latest' }} | |
| run: | | |
| curl -Os https://uploader.codecov.io/latest/linux/codecov | |
| chmod +x codecov | |
| ./codecov -t ${CODECOV_TOKEN} |