Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.

Missing link or links in Rd file 'run_gsva.Rd':

Codoc mismatches from Rd file 'get_collectri.Rd':

Files in the 'vignettes' directory but no files in 'inst/doc':

Directory 'inst/doc' does not exist.