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Sklearn compatibility #287

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darikoneil
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Added decorator to adjust the arguments to the sklearn's NMF constructor such that the >=1.0 implementation's objective is identical to <= 1.0 implementation. Specifically, it generates alpha_W & alpha_H from the passed alpha parameter such that the alpha's in the objective match after scaling (there is not option to turn off scaling the alpha's in the new implementation). Results match original implementation with 1e-7 tolerance. Not sure if fix is compatible with python 2.

Added option for MiniBatchNMF with decorator so that it is also compatible.

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codecov bot commented Jun 21, 2023

Codecov Report

Patch coverage: 40.90% and project coverage change: -11.46 ⚠️

Comparison is base (8cf6a17) 94.08% compared to head (caec4d6) 82.63%.

Additional details and impacted files
@@             Coverage Diff             @@
##           master     #287       +/-   ##
===========================================
- Coverage   94.08%   82.63%   -11.46%     
===========================================
  Files           8        8               
  Lines        1217     1215        -2     
  Branches      313      306        -7     
===========================================
- Hits         1145     1004      -141     
- Misses         36      173      +137     
- Partials       36       38        +2     
Flag Coverage Δ
nbsmoke ?
unittests ?

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Impacted Files Coverage Δ
fissa/neuropil.py 80.72% <40.90%> (-14.74%) ⬇️

... and 4 files with indirect coverage changes

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@nathalierochefort
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Thank you very much for the pull request, it's a great change. We won't currently integrate it directly but will point other users to this pull request if they need it, with new versions of sklearn.

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