prepare for release

rfhb · Feb 25, 2024 · c203738 · c203738
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: ctrdata
 Type: Package
 Title: Retrieve and Analyze Clinical Trials in Public Registers
-Version: 1.17.1.9000
+Version: 1.17.2
 Imports: jsonlite, httr, curl (>= 5.1.0), clipr, xml2, nodbi (>= 0.10.0), 
          stringi, tibble, lubridate, jqr, dplyr, zip, V8, readr, digest
 URL: https://cran.r-project.org/package=ctrdata, https://rfhb.github.io/ctrdata/

diff --git a/NEWS.md b/NEWS.md
@@ -1,9 +1,9 @@
-# ctrdata 1.17.1.9000
+# ctrdata 1.17.2
 
 ## Bug fixes
 - Switch sequence of API endpoints used with `CTIS` 
-- Re-use `CTIS` downloads but check for new trials compared to last run
 - Correct handling multiple public events with `CTIS`
+- Re-use `CTIS` downloads in a given session
 
 # ctrdata 1.17.1 (2024-02-05)
 

diff --git a/R/ctrdata-registers.R b/R/ctrdata-registers.R
@@ -28,7 +28,7 @@
 #' | FAQ | \href{https://www.clinicaltrialsregister.eu/doc/EU_CTR_FAQ.pdf}{link} | \href{https://www.clinicaltrials.gov/about-site/selected-publications}{link} | \href{https://www.clinicaltrials.gov/about-site/about-ctg}{link} | \href{https://www.isrctn.com/page/faqs}{link} | |
 #' | Expert / advanced search | \href{https://www.clinicaltrialsregister.eu/ctr-search/search}{link} | \href{https://classic.clinicaltrials.gov/ct2/results/refine?show_xprt=Y}{link} | | \href{https://www.isrctn.com/editAdvancedSearch}{link} | \ifelse{latex}{\out{\href{https://euclinicaltrials.eu/app/\#/search}{link}}}{\href{https://euclinicaltrials.eu/app/#/search}{link}} |
 #' | Example* | \ifelse{latex}{\out{\href{https://www.clinicaltrialsregister.eu/ctr-search/search?query=Infections\&age=newborn\&age=preterm-new-born-infants}{link}}}{\href{https://www.clinicaltrialsregister.eu/ctr-search/search?query=Infections&age=newborn&age=preterm-new-born-infants}{link}} | \ifelse{latex}{\out{\href{https://classic.clinicaltrials.gov/ct2/results/refine?term=AREA[MaximumAge]+RANGE[0+days,1+months]\&type=Intr\&cond=Infections\&intr=Investigational+Agent\&show_xprt=Y}{link}}}{\href{https://classic.clinicaltrials.gov/ct2/results/refine?term=AREA%5BMaximumAge%5D+RANGE%5B0+days,1+months%5D&type=Intr&cond=Infections&intr=Investigational+Agent&show_xprt=Y}{link}} | \ifelse{latex}{\out{\href{https://www.clinicaltrials.gov/search?ageRange=0M_1M\&cond=Infections\&aggFilters=studyType:int\&distance=50\&intr=Investigational+Agent}{link}}}{\href{https://www.clinicaltrials.gov/search?ageRange=0M_1M&cond=Infections&aggFilters=studyType:int&distance=50&intr=Investigational+Agent}{link}} | \ifelse{latex}{\out{\href{https://www.isrctn.com/search?q=\&filters=ageRange:Neonate,conditionCategory:Infections+and+Infestations\&searchType=advanced-search}{link}}}{\href{https://www.isrctn.com/search?q=&filters=ageRange:Neonate,conditionCategory:Infections+and+Infestations&searchType=advanced-search}{link}} | \ifelse{latex}{\out{\href{https://euclinicaltrials.eu/app/\#/search?basicSearchInputAND=infections\&ageGroupCode=2}{link}}}{\href{https://euclinicaltrials.eu/app/#/search?basicSearchInputAND=infections&ageGroupCode=2}{link}} |
-#' | Definitions | \href{https://eudract.ema.europa.eu/result.html}{link} | \href{https://prsinfo.clinicaltrials.gov/prs-xml-schemas.html}{link} | \href{https://www.clinicaltrials.gov/data-about-studies/study-data-structure}{link} | \href{https://www.isrctn.com/page/definitions}{link} | \href{https://www.ema.europa.eu/en/human-regulatory-overview/research-and-development/clinical-trials-human-medicines/clinical-trials-information-system-training-and-support}{link} |
+#' | Definitions | \href{https://eudract.ema.europa.eu/result.html}{link} | \href{https://prsinfo.clinicaltrials.gov/prs-xml-schemas.html}{link} | \href{https://www.clinicaltrials.gov/data-about-studies/study-data-structure}{link} | \href{https://www.isrctn.com/page/definitions}{link} | \href{https://www.ema.europa.eu/en/human-regulatory-overview/research-and-development/clinical-trials-human-medicines/clinical-trials-information-system-training-support}{link} |
 #'
 #' *The example is an expert search that retrieves interventional
 #' trials with neonates, investigating infectious conditions:

diff --git a/cran-comments.md b/cran-comments.md
@@ -1,36 +1,40 @@
 ## Test environments
 
-* local: macOS 21.6.0, R 4.2.3 (ok)
+* local: R Under development (unstable) (2024-02-23 r85975) using platform: x86_64-apple-darwin20 (ok)
 
-* macOS builder: r-devel-macosx-arm64|4.4.0|macosx|macOS 13.3.1 (22E261)|Mac mini|Apple M1||en_US.UTF-8|macOS 11.3|clang-1403.0.22.14.1|GNU Fortran (GCC) 12.2.0 (ok)
+* macOS builder: r-release-macosx-arm64|4.3.0|macosx|macOS 13.3.1 (22E261)|Mac mini|Apple M1||en_US.UTF-8|macOS 11.3|clang-1403.0.22.14.1|GNU Fortran (GCC) 12.2.0 (ok)
 
-* Win-builder: R Under development (unstable) (2024-02-02 r85855 ucrt) x86_64-w64-mingw32; R version 4.2.3 (2023-03-15 ucrt) x86_64-w64-mingw32 (64-bit); R version 4.3.2 (2023-10-31 ucrt) x86_64-w64-mingw32 (64-bit) (ok)
+* Win-builder: R Under development (unstable) (2024-02-24 r85984 ucrt) using platform: x86_64-w64-mingw32; R version 4.3.2 (2023-10-31 ucrt) using platform: x86_64-w64-mingw32 (64-bit); R version 4.2.3 (2023-03-15 ucrt) using platform: x86_64-w64-mingw32 (64-bit) (ok)
 
-* R-hub: Windows Server 2022, R-devel, 64 bit; Ubuntu Linux 20.04.1 LTS, R-release, GCC (ok)
+* R-hub: Windows Server 2022, R-devel, 64 bit; Fedora Linux, R-devel, clang, gfortran (ok)
 
-* GitHub actions: macOS-lates, R release (ok)
+* GitHub actions: windows-2022, r: 'release'; macOS-latest, r: 'release'; macOS-latest, r: 'oldrel'; ubuntu-latest, r: 'devel' (ok)
 
 
 ## Local R CMD check results
 
 0 errors | 0 warnings | 0 or 1 notes 
 
-NOTES come from checking package documentation (referenced publicationswork when accessed manually but respond with HTML error 403 when accessed from test systems; https://eudract.ema.europa.eu/ presents an incomplete certificate chain, beyond my control).
+Explanation of NOTES: 
+- links to publications are accessible manually but may respond with an HTML error 403 in test systems
+- https://eudract.ema.europa.eu/ may present an incomplete certificate chain.
 
 
 ## Submission reason
 
-### Improvements
-- Provide access to additional data from `CTIS`, improved user information
+- The ERROR on CRAN is related to a dependency which was corrected on 2024-02-24 (nodbi version 0.10.2, see https://cloud.r-project.org/web/checks/check_results_nodbi.html)
 
-### Bug fixes
-- Added handling of Unicode emitted by `EUCTR` for at least one trial
+- Correct handling multiple public events with `CTIS`
+- Switch sequence of API endpoints used with `CTIS` 
+- Re-use `CTIS` downloads in a given session
 
 
 ## revdepcheck results
 
-There are 0 reverse dependencies.
+We checked 0 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
 
+ * We saw 0 new problems
+ * We failed to check 0 packages
 
 ----
 

diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html
diff --git a/docs/LICENSE.html b/docs/LICENSE.html
diff --git a/docs/articles/ctrdata_install.html b/docs/articles/ctrdata_install.html
diff --git a/docs/articles/ctrdata_retrieve.html b/docs/articles/ctrdata_retrieve.html
diff --git a/docs/articles/ctrdata_summarise.html b/docs/articles/ctrdata_summarise.html
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -1,11 +1,11 @@
-pandoc: 3.1.11.1
+pandoc: 3.1.12.1
 pkgdown: 2.0.7
 pkgdown_sha: ~
 articles:
   ctrdata_install: ctrdata_install.html
   ctrdata_retrieve: ctrdata_retrieve.html
   ctrdata_summarise: ctrdata_summarise.html
-last_built: 2024-02-13T19:23Z
+last_built: 2024-02-25T08:30Z
 urls:
   reference: https://rfhb.github.io/ctrdata/reference
   article: https://rfhb.github.io/ctrdata/articles

diff --git a/docs/reference/ctrDb.html b/docs/reference/ctrDb.html
diff --git a/docs/reference/ctrFindActiveSubstanceSynonyms.html b/docs/reference/ctrFindActiveSubstanceSynonyms.html
diff --git a/docs/reference/ctrGetQueryUrl.html b/docs/reference/ctrGetQueryUrl.html
diff --git a/docs/reference/ctrLoadQueryIntoDb.html b/docs/reference/ctrLoadQueryIntoDb.html