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Releases: qbicsoftware/etl-scripts

Version 1.14.0

17 Mar 14:35
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prepare release (#112)

* add error handling via email for attachment upload (#111)

* update readme for attachment upload

Patch release 1.13.1

15 Feb 16:00
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  • Fixes minor issue with simultaneous registration of fastq and vcf files
  • Fixes debug prints causing errors due to concatenation

Release 1.13.0

16 Dec 16:21
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  • Enables registration of new version of nanopore data including extra basecalling folder
  • Fixes mistake in readme for imaging data registration
  • Makes imaging data registration error handling compatible with old python/jython versions

Minor release 1.12.0

05 Oct 13:32
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Logs duplicate MTB dataset registration but does not cause manual intervention anymore.

Chocolate Macaron

09 May 16:21
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Prepare release 1.11.0 (#96)

* change ms conversion server

* remove some log files dependent on origin lab (#95)

Co-authored-by: Tobias Koch <[email protected]>

* handle data without unclassified reads

* Update CL (#92)

Co-authored-by: Tobias Koch <[email protected]>
Co-authored-by: Sven F <[email protected]>

The dark knight returns

26 Jul 10:23
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  • Provides new ETL for MTB project data that are not supposed to be stored in QUK17 (#89)
  • Allow multiple sequencing lanes for MTB data

The dark ETL rises

28 Jun 12:54
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  • Provides new ETL routine written in Java, that will replace all Jython scripts at some point (#85)
  • Support for nf-core pipeline result registration (#85)
  • Provides metadata validation for imaging data (OMERO etl). (#85)

Spring Roll

11 May 12:39
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  • Add example Java dropbox

From 1.7.0:

  • Provides fully tested functionality to register generic imaging data, with OMERO server support (v5.4.10).
  • Uses an omero-importer-cli (with Bio-formats) for image file registration into an OMERO server instance
  • Uses an initial version of the openBIS-OMERO metadata model

Blue Moon

22 Jan 16:15
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  • Fix for workflow result registration: fetch sample by identifier instead of search service
  • Retry sample tracking updates twice and log failures that occur

Yellow Autumn

03 Nov 11:24
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  • New maintenance task: update missing checksum once, after dss starts.
  • Fix for nanopore registration: rename folders for pooling case
  • Fix for experiment update: force identifier into a string to support v3 API objects