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uv support in CI #4353

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merged 5 commits into from
Sep 1, 2024
Merged

uv support in CI #4353

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602c8d6
Using uv for testing and benchmark workflows
santacodes Aug 13, 2024
c227311
Merge branch 'pybamm-team:develop' into uv
santacodes Aug 16, 2024
dfddb3d
Merge branch 'develop' into uv
santacodes Aug 29, 2024
1a1c091
fix failing notebook tests
santacodes Aug 29, 2024
4b57947
Merge branch 'develop' into uv
santacodes Sep 1, 2024
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7 changes: 5 additions & 2 deletions .github/workflows/benchmark_on_push.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -23,10 +23,13 @@ jobs:
sudo apt-get update
sudo apt install gfortran gcc libopenblas-dev

- name: Set up uv
run: python -m pip install uv

- name: Install python dependencies
run: |
python -m pip install --upgrade pip wheel setuptools wget cmake casadi numpy
python -m pip install asv[virtualenv]
python -m uv pip install --upgrade pip wheel setuptools wget cmake casadi numpy
python -m uv pip install asv[virtualenv]

- name: Install SuiteSparse and SUNDIALS
run: python scripts/install_KLU_Sundials.py
Expand Down
7 changes: 5 additions & 2 deletions .github/workflows/periodic_benchmarks.yml
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Expand Up @@ -31,10 +31,13 @@ jobs:
sudo apt-get update
sudo apt-get install gfortran gcc libopenblas-dev

- name: Set up uv
run: python -m pip install uv

- name: Install python dependencies
run: |
python -m pip install --upgrade pip wheel setuptools wget cmake casadi numpy
python -m pip install asv[virtualenv]
python -m uv pip install --upgrade pip wheel setuptools wget cmake casadi numpy
python -m uv pip install asv[virtualenv]

- name: Install SuiteSparse and SUNDIALS
run: python scripts/install_KLU_Sundials.py
Expand Down
20 changes: 16 additions & 4 deletions .github/workflows/run_periodic_tests.yml
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Expand Up @@ -68,8 +68,11 @@ jobs:
with:
python-version: ${{ matrix.python-version }}

- name: Set up uv
run: python -m pip install uv

- name: Install nox
run: python -m pip install nox
run: python -m uv pip install nox[uv]

- name: Install SuiteSparse and SUNDIALS on GNU/Linux and macOS
timeout-minutes: 10
Expand Down Expand Up @@ -114,8 +117,11 @@ jobs:
with:
python-version: 3.11

- name: Set up uv
run: python -m pip install uv

- name: Install nox
run: python -m pip install nox
run: python -m uv pip install nox[uv]

- name: Install docs dependencies and run doctests for GNU/Linux
run: python -m nox -s doctests
Expand All @@ -141,8 +147,11 @@ jobs:
with:
python-version: 3.12

- name: Set up uv
run: python -m pip install uv

- name: Install nox
run: python -m pip install nox
run: python -m uv pip install nox[uv]

- name: Install SuiteSparse and SUNDIALS on GNU/Linux
timeout-minutes: 10
Expand All @@ -169,8 +178,11 @@ jobs:
with:
python-version: 3.12

- name: Set up uv
run: python -m pip install uv

- name: Install nox
run: python -m pip install nox
run: python -m uv pip install nox[uv]

- name: Install SuiteSparse and SUNDIALS on GNU/Linux
timeout-minutes: 10
Expand Down
25 changes: 20 additions & 5 deletions .github/workflows/test_on_push.yml
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Expand Up @@ -27,9 +27,12 @@ jobs:
with:
python-version: 3.12

- name: Set up uv
run: python -m pip install uv

- name: Check style
run: |
python -m pip install pre-commit
python -m uv pip install pre-commit
pre-commit run -a

run_unit_integration_and_coverage_tests:
Expand Down Expand Up @@ -86,8 +89,11 @@ jobs:
python-version: ${{ matrix.python-version }}
cache: 'pip'

- name: Set up uv
run: python -m pip install uv

- name: Install nox
run: python -m pip install nox
run: python -m uv pip install nox[uv]

- name: Cache pybamm-requires nox environment for GNU/Linux and macOS
uses: actions/cache@v4
Expand Down Expand Up @@ -158,8 +164,11 @@ jobs:
python-version: 3.11
cache: 'pip'

- name: Set up uv
run: python -m pip install uv

- name: Install nox
run: python -m pip install nox
run: python -m uv pip install nox[uv]

- name: Install docs dependencies and run doctests for GNU/Linux
run: python -m nox -s doctests
Expand Down Expand Up @@ -198,8 +207,11 @@ jobs:
python-version: 3.12
cache: 'pip'

- name: Set up uv
run: python -m pip install uv

- name: Install nox
run: python -m pip install nox
run: python -m uv pip install nox[uv]

- name: Cache pybamm-requires nox environment for GNU/Linux
uses: actions/cache@v4
Expand Down Expand Up @@ -251,8 +263,11 @@ jobs:
python-version: 3.12
cache: 'pip'

- name: Set up uv
run: python -m pip install uv

- name: Install nox
run: python -m pip install nox
run: python -m uv pip install nox[uv]

- name: Cache pybamm-requires nox environment for GNU/Linux
uses: actions/cache@v4
Expand Down
4 changes: 2 additions & 2 deletions noxfile.py
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Expand Up @@ -7,7 +7,7 @@


# Options to modify nox behaviour
nox.options.default_venv_backend = "virtualenv"
nox.options.default_venv_backend = "uv|virtualenv"
nox.options.reuse_existing_virtualenvs = True
if sys.platform != "win32":
nox.options.sessions = ["pre-commit", "pybamm-requires", "unit"]
Expand Down Expand Up @@ -207,7 +207,7 @@ def run_examples(session):
"""Run the examples tests for Jupyter notebooks."""
set_environment_variables(PYBAMM_ENV, session=session)
session.install("setuptools", silent=False)
session.install("-e", ".[all,dev]", silent=False)
session.install("-e", ".[all,dev,jax]", silent=False)
notebooks_to_test = session.posargs if session.posargs else []
session.run(
"pytest", "--nbmake", *notebooks_to_test, "docs/source/examples/", external=True
Expand Down
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