mic_dachuang-utilities

Utilities developed to tackle specific problems in one medical imaging "College student Innovation" program (Dachuang).

Classification

cls_proto.py

Testing different classifiers for determination of clue cells.

testimg.py & testimg_plot.py

Test images and write clue cells detection results to file.

Making datasets

Slice.py & cuto1024.py

Slice images of various resolution to 1024*1024px images, preserving bounding boxes that mostly fit into the picture.

voc2coco.py

Convert PASCAL-VOC style annotations to MS COCO format.

multiple_json2coco.py

Merge discrete JSON annotations into one, as MS COCO dataset.

demo.py

Test a model and draw both generated and pre-annotated bounding boxes on testing images.

testall.py

Test all epochs of a run with one config, and compare results of them.

Other utilities

notify_with_email.py

Supervise the training progress in background, report at each epoch's start with email, also automatically test the last epoch and send the result with email when a new epoch starts.