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Just a list of Singularity definition files maintained by the Biomed Applications Group

www.psc.edu
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README.md
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List of Singularity definition files, modulefiles and more

Build it!

This repository lists the Singularity definition files and other files needed to deploy software on Bridges2, HuBMAP HIVE and Brain Image Library.

STEM

Name Information
abyss StatusStatusIssueforksStarsLicense
anvio StatusStatusIssueforksStarsLicense
asciigenome StatusStatusIssueforksStarsLicense
aspera-connect StatusStatusIssueforksStarsLicense
augustus StatusStatusIssueforksStarsLicense
bamtools StatusStatusIssueforksStarsLicense
bcftools StatusStatusIssueforksStarsLicense
bedops StatusStatusIssueforksStarsLicense
bedtools StatusStatusIssueforksStarsLicense
bioformats2raw StatusStatusIssueforksStarsLicense
bismark StatusStatusIssueforksStarsLicense
blast StatusStatusIssueforksStarsLicense
blat StatusStatusIssueforksStarsLicense
bowtie2 StatusStatusIssueforksStarsLicense
braker2 StatusStatusIssueforksStarsLicense
bsmap StatusStatusIssueforksStarsLicense
busco StatusStatusIssueforksStarsLicense
bwa StatusStatusIssueforksStarsLicense
checkm StatusStatusIssueforksStarsLicense
cutadapt StatusStatusIssueforksStarsLicense
fastani StatusStatusIssueforksStarsLicense
fastq-tools StatusStatusIssueforksStarsLicense
fastqc StatusStatusIssueforksStarsLicense
fasttree StatusStatusIssueforksStarsLicense
filtlong StatusStatusIssueforksStarsLicense
flash StatusStatusIssueforksStarsLicense
funannotate StatusStatusIssueforksStarsLicense
gatk StatusStatusIssueforksStarsLicense
genemark-es StatusStatusIssueforksStarsLicense
gent StatusStatusIssueforksStarsLicense
guppy StatusStatusIssueforksStarsLicense
guppy-gpu StatusStatusIssueforksStarsLicense
hisat2 StatusStatusIssueforksStarsLicense
hmmer StatusStatusIssueforksStarsLicense
htslib StatusStatusIssueforksStarsLicense
kraken2 StatusStatusIssueforksStarsLicense
meme-suite StatusStatusIssueforksStarsLicense
methylpy StatusStatusIssueforksStarsLicense
nanoplot StatusStatusIssueforksStarsLicense
ncview StatusStatusIssueforksStarsLicense
octave StatusStatusIssueforksStarsLicense
phylip-suite StatusStatusIssueforksStarsLicense
picard StatusStatusIssueforksStarsLicense
porechop StatusStatusIssueforksStarsLicense
prodigal StatusStatusIssueforksStarsLicense
raw2ometiff StatusStatusIssueforksStarsLicense
raxml StatusStatusIssueforksStarsLicense
rnaview StatusStatusIssueforksStarsLicense
rust StatusStatusIssueforksStarsLicense
salmon StatusStatusIssueforksStarsLicense
samtools StatusStatusIssueforksStarsLicense
spades StatusStatusIssueforksStarsLicense
sra-toolkit StatusStatusIssueforksStarsLicense
star StatusStatusIssueforksStarsLicense
star-fusion StatusStatusIssueforksStarsLicense
tiger StatusStatusIssueforksStarsLicense
trimmomatic StatusStatusIssueforksStarsLicense
vcf2maf StatusStatusIssueforksStarsLicense
viennarna StatusStatusIssueforksStarsLicense

Utilities

Name Information
asciinema StatusStatusIssueforksStarsLicense
aws-cli StatusStatusIssueforksStarsLicense
bat StatusStatusIssueforksStarsLicense
browsh StatusStatusIssueforksStarsLicense
btop StatusStatusIssueforksStarsLicense
circos StatusStatusIssueforksStarsLicense
cwltool StatusStatusIssueforksStarsLicense
dua StatusStatusIssueforksStarsLicense
dust StatusStatusIssueforksStarsLicense
fdupes StatusStatusIssueforksStarsLicense
ffmpeg StatusStatusIssueforksStarsLicense
flac StatusStatusIssueforksStarsLicense
glances StatusStatusIssueforksStarsLicense
gnuplot StatusStatusIssueforksStarsLicense
graphviz StatusStatusIssueforksStarsLicense
hashdeep StatusStatusIssueforksStarsLicense
hyperfine StatusStatusIssueforksStarsLicense
imagemagick StatusStatusIssueforksStarsLicense
jp StatusStatusIssueforksStarsLicense
jq StatusStatusIssueforksStarsLicense
lazygit StatusStatusIssueforksStarsLicense
libtiff-tools StatusStatusIssueforksStarsLicense
lowcharts StatusStatusIssueforksStarsLicense
mc StatusStatusIssueforksStarsLicense
ncdu StatusStatusIssueforksStarsLicense
octave StatusStatusIssueforksStarsLicense
pandiff StatusStatusIssueforksStarsLicense
pandoc StatusStatusIssueforksStarsLicense
rclone StatusStatusIssueforksStarsLicense
rich-cli StatusStatusIssueforksStarsLicense
shellcheck StatusStatusIssueforksStarsLicense
vim StatusStatusIssueforksStarsLicense
visidata StatusStatusIssueforksStarsLicense
wordgrinder StatusStatusIssueforksStarsLicense

Copyright © 2020-2024 Pittsburgh Supercomputing Center. All Rights Reserved.

The Biomedical Applications Group at the Pittsburgh Supercomputing Center in the Mellon College of Science at Carnegie Mellon University.

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Just a list of Singularity definition files maintained by the Biomed Applications Group

www.psc.edu

Topics

singularity biomedical-informatics containerization biomedical-data-science

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