Skip to content

Commit

Permalink
Add v0.3 of PGxO and associated documentation
Browse files Browse the repository at this point in the history
  • Loading branch information
pmonnin committed Mar 23, 2018
1 parent 23231cc commit 100b6fe
Show file tree
Hide file tree
Showing 5 changed files with 444 additions and 134 deletions.
19 changes: 13 additions & 6 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -8,13 +8,20 @@ PGxO is also available on the [NCBO BioPortal](https://bioportal.bioontology.org

Documentation is available in the ``doc/`` folder:

* [pgxo-overview.pdf](doc/pgxo-overview.pdf): Figure presenting PGxO concepts and relations
* [pgxo_with_instances.owl](doc/pgxo_with_instances.owl): An instantiated version of PGxO
* [global-fig.pdf](doc/global-fig.pdf): Global figure presenting the instantiation of PGxO
* [mapp1.owl](doc/mapp1.owl): Mappings from PGxO to four ontologies related to PGx
* [mapp2.owl](doc/mapp2.owl): Mappings from PGxO to three large spectrum ontologies
* [pgxo-overview.pdf](doc/pgxo-overview.pdf): Figure presenting PGxO main concepts and relations.
* [pgxo_with_instances.owl](doc/pgxo_with_instances.owl): An instantiated version of PGxO.
* [global-fig.pdf](doc/global-fig.pdf): Global figure presenting the instantiation of PGxO.
* [mapp1.owl](doc/mapp1.owl): Mappings from PGxO to four ontologies related to PGx (SO-PHARM, PO, PHARE and Genomic CDS).
* [mapp2.owl](doc/mapp2.owl): Mappings from PGxO to three large spectrum ontologies (MeSH, NCIt and SNOMED CT).

## References

1. Monnin, P., Jonquet, C., Legrand, J., Napoli, A., & Coulet, A. (2017, October).
PGxO: A very lite ontology to reconcile pharmacogenomic knowledge units.
In _Methods, tools & platforms for Personalized Medicine in the Big Data Era_.
[Link](https://hal.inria.fr/hal-01593184/document)

## Acknowledgments

PGxO is supported by the *PractiKPharma* project (http://practikpharma.loria.fr/), funded by the French National Research Agency (ANR) under grant ANR-15-CE23-0028.
PGxO is supported by the *PractiKPharma* project (http://practikpharma.loria.fr/),
funded by the French National Research Agency (ANR) under grant ANR-15-CE23-0028.
Binary file modified doc/global-fig.pdf
Binary file not shown.
Binary file modified doc/pgxo-overview.pdf
Binary file not shown.
Loading

0 comments on commit 100b6fe

Please sign in to comment.