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reporting fix, yields dont add up
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bodirsky committed Feb 26, 2024
1 parent 17cb29f commit 7a67f9e
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Showing 7 changed files with 23 additions and 13 deletions.
3 changes: 2 additions & 1 deletion .buildlibrary
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@@ -1,4 +1,4 @@
ValidationKey: '50636092'
ValidationKey: '50673798'
AutocreateReadme: yes
AcceptedWarnings:
- 'Warning: package ''.*'' was built under R version'
Expand All @@ -7,3 +7,4 @@ AcceptedNotes:
- unable to verify current time
- Depends: includes the non-default packages
allowLinterWarnings: no
enforceVersionUpdate: no
5 changes: 5 additions & 0 deletions .github/workflows/check.yaml
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Expand Up @@ -49,6 +49,11 @@ jobs:
shell: Rscript {0}
run: lucode2:::validkey(stopIfInvalid = TRUE)

- name: Verify that lucode2::buildLibrary was successful
if: github.event_name == 'pull_request'
shell: Rscript {0}
run: lucode2:::isVersionUpdated()

- name: Checks
shell: Rscript {0}
run: |
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4 changes: 2 additions & 2 deletions CITATION.cff
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Expand Up @@ -2,8 +2,8 @@ cff-version: 1.2.0
message: If you use this software, please cite it using the metadata from this file.
type: software
title: 'mrvalidation: madrat data preparation for validation purposes'
version: 2.56.1
date-released: '2024-02-19'
version: 2.56.2
date-released: '2024-02-26'
abstract: Package contains routines to prepare data for validation exercises.
authors:
- family-names: Bodirsky
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4 changes: 2 additions & 2 deletions DESCRIPTION
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@@ -1,8 +1,8 @@
Type: Package
Package: mrvalidation
Title: madrat data preparation for validation purposes
Version: 2.56.1
Date: 2024-02-19
Version: 2.56.2
Date: 2024-02-26
Authors@R: c(
person("Benjamin Leon", "Bodirsky", , "[email protected]", role = c("aut", "cre")),
person("Stephen", "Wirth", role = "aut"),
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2 changes: 1 addition & 1 deletion R/calcValidCroparea.R
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Expand Up @@ -35,7 +35,7 @@ calcValidCroparea <- function(datasource = "FAO", detail = FALSE) {
cellular = FALSE),
paste("Resources|Land Cover|Cropland|+|", reportingnames("fallow"), sep = ""))
cropland <- setNames(dimSums(mbind(data, fallow), dim = 3.1),
"Resources|Land Cover|+|Cropland")
"Resources|Land Cover|Cropland|+|Croparea")
out <- mbind(cropland, fallow, croparea)
getNames(out) <- paste(getNames(out), "(million ha)", sep = " ")
out <- add_dimension(out, dim = 3.1, add = "scenario", nm = "historical")
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12 changes: 8 additions & 4 deletions R/calcValidYield.R
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Expand Up @@ -41,7 +41,8 @@ calcValidYield <- function(datasource = "FAO", future = NULL) {
"pasture")
area <- mbind(croparea, pastarea)
area <- summationhelper(reporthelper(area,
level_zero_name = "Productivity|Yield"))
level_zero_name = "Productivity|Yield"),
sep = NULL)

# Calculate production
histproduction <- calcOutput("FAOmassbalance", aggregate = FALSE)
Expand All @@ -57,7 +58,8 @@ calcValidYield <- function(datasource = "FAO", future = NULL) {

# Calculate Yields
production <- summationhelper(reporthelper(production,
level_zero_name = "Productivity|Yield"))
level_zero_name = "Productivity|Yield"),
sep = NULL)
yield <- production / area

# Check for NaN values
Expand Down Expand Up @@ -113,7 +115,8 @@ calcValidYield <- function(datasource = "FAO", future = NULL) {
"pasture")
area <- mbind(croparea[, getYears(pastarea), ], pastarea)
area <- summationhelper(reporthelper(area,
level_zero_name = "Productivity|Yield by physical area"))
level_zero_name = "Productivity|Yield by physical area"),
sep = NULL)

# Calculate production
histproduction <- calcOutput("FAOmassbalance", aggregate = FALSE)
Expand All @@ -129,7 +132,8 @@ calcValidYield <- function(datasource = "FAO", future = NULL) {

# Calculate Yields
production <- summationhelper(reporthelper(production,
level_zero_name = "Productivity|Yield by physical area"))
level_zero_name = "Productivity|Yield by physical area"),
sep = NULL)
yield <- production / area

# Check for NaN values
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6 changes: 3 additions & 3 deletions README.md
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@@ -1,6 +1,6 @@
# madrat data preparation for validation purposes

R package **mrvalidation**, version **2.56.1**
R package **mrvalidation**, version **2.56.2**

[![CRAN status](https://www.r-pkg.org/badges/version/mrvalidation)](https://cran.r-project.org/package=mrvalidation) [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.4317826.svg)](https://doi.org/10.5281/zenodo.4317826) [![R build status](https://github.com/pik-piam/mrvalidation/workflows/check/badge.svg)](https://github.com/pik-piam/mrvalidation/actions) [![codecov](https://codecov.io/gh/pik-piam/mrvalidation/branch/master/graph/badge.svg)](https://app.codecov.io/gh/pik-piam/mrvalidation) [![r-universe](https://pik-piam.r-universe.dev/badges/mrvalidation)](https://pik-piam.r-universe.dev/builds)

Expand Down Expand Up @@ -39,7 +39,7 @@ In case of questions / problems please contact Benjamin Leon Bodirsky <bodirsky@

To cite package **mrvalidation** in publications use:

Bodirsky B, Wirth S, Karstens K, Humpenoeder F, Stevanovic M, Mishra A, Biewald A, Weindl I, Beier F, Chen D, Crawford M, Leip D, Molina Bacca E, Kreidenweis U, W. Yalew A, von Jeetze P, Wang X, Dietrich J, Alves M (2024). _mrvalidation: madrat data preparation for validation purposes_. doi:10.5281/zenodo.4317826 <https://doi.org/10.5281/zenodo.4317826>, R package version 2.56.1, <https://github.com/pik-piam/mrvalidation>.
Bodirsky B, Wirth S, Karstens K, Humpenoeder F, Stevanovic M, Mishra A, Biewald A, Weindl I, Beier F, Chen D, Crawford M, Leip D, Molina Bacca E, Kreidenweis U, W. Yalew A, von Jeetze P, Wang X, Dietrich J, Alves M (2024). _mrvalidation: madrat data preparation for validation purposes_. doi:10.5281/zenodo.4317826 <https://doi.org/10.5281/zenodo.4317826>, R package version 2.56.2, <https://github.com/pik-piam/mrvalidation>.

A BibTeX entry for LaTeX users is

Expand All @@ -48,7 +48,7 @@ A BibTeX entry for LaTeX users is
title = {mrvalidation: madrat data preparation for validation purposes},
author = {Benjamin Leon Bodirsky and Stephen Wirth and Kristine Karstens and Florian Humpenoeder and Mishko Stevanovic and Abhijeet Mishra and Anne Biewald and Isabelle Weindl and Felicitas Beier and David Chen and Michael Crawford and Debbora Leip and Edna {Molina Bacca} and Ulrich Kreidenweis and Amsalu {W. Yalew} and Patrick {von Jeetze} and Xiaoxi Wang and Jan Philipp Dietrich and Marcos Alves},
year = {2024},
note = {R package version 2.56.1},
note = {R package version 2.56.2},
doi = {10.5281/zenodo.4317826},
url = {https://github.com/pik-piam/mrvalidation},
}
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