update transport cost reporting

.buildlibrary

@@ -1,4 +1,4 @@
-ValidationKey: '49164864'
+ValidationKey: '49197001'
 AutocreateReadme: yes
 AcceptedWarnings:
 - 'Warning: package ''.*'' was built under R version'

CITATION.cff

@@ -2,8 +2,8 @@ cff-version: 1.2.0
 message: If you use this software, please cite it using the metadata from this file.
 type: software
 title: 'mrvalidation: madrat data preparation for validation purposes'
-version: 2.51.2
-date-released: '2023-08-03'
+version: 2.51.3
+date-released: '2023-08-08'
 abstract: Package contains routines to prepare data for validation exercises.
 authors:
 - family-names: Bodirsky

DESCRIPTION

@@ -1,8 +1,8 @@
 Type: Package
 Package: mrvalidation
 Title: madrat data preparation for validation purposes
-Version: 2.51.2
-Date: 2023-08-03
+Version: 2.51.3
+Date: 2023-08-08
 Authors@R: c(
     person("Benjamin Leon", "Bodirsky", , "[email protected]", role = c("aut", "cre")),
     person("Stephen", "Wirth", role = "aut"),

R/calcValidCostsTransport.R

@@ -85,7 +85,7 @@ out <- new.magpie(cells_and_regions = getItems(transportGtap, dim = 1),
       description <- "Wholesale Costs"
 }
 
-  out <- reporthelper(out, level_zero_name = lzname, partly = TRUE)
+  out <- reporthelper(out, level_zero_name = lzname, partly = TRUE, detail = FALSE)
   out <- summationhelper(out, excludeLevels = 1)
 
   out <- add_dimension(out, dim = 3.1, add = "scenario", nm = "historical")
@@ -119,17 +119,10 @@ out <- new.magpie(cells_and_regions = getItems(transportGtap, dim = 1),
   out   <- toolAggregate(out, rel = mapping, from = "celliso", to = "iso", dim = 1)
   out   <- toolCountryFill(out, fill = 0)
 
-# add missing product groups, so that report and summation helper work properly.
-  # Note that forest, secondary, fish, bioenergy and  residues set to 0 currently
- missingProducts <- setdiff(findset("kall"), products)
-  out <- add_columns(out, addnm = missingProducts, dim = 3.1)
-  out[, , missingProducts] <- 0
-
- out <- reporthelper(out, dim = 3.1, level_zero_name = "Costs|Transport", detail = FALSE)
+ out <- reporthelper(out, dim = 3.1, level_zero_name = "Costs|Transport", partly = TRUE,
+                      detail = FALSE)
  out <- summationhelper(out)
 
- getNames(out[, , "Costs|+|Transport"]) <- "Costs|Transport"
-
  getNames(out) <- paste(getNames(out), "(million US$05/yr)", sep = " ")
  unit <- "million US$05/yr"
 

R/fullVALIDATION.R

@@ -298,7 +298,7 @@ if (rev < 4.66) stop("mrvalidation(>= 2.34.0) does not support revision below 4.
   # Costs validation
   calcOutput(type = "ValidCostsOverall", datasource = "FAO", aggregate = "REG+GLO",
              file = valfile, append = TRUE, try = TRUE) # Overall costs.
-  calcOutput(type = "ValidCostsTransport", datasource = "GTAPtransport", aggregate = FALSE,
+  calcOutput(type = "ValidCostsTransport", datasource = "GTAPtransport", aggregate = "REG+GLO",
              file = valfile, append = TRUE, try = TRUE)
   calcOutput(type = "ValidCostsTransport", datasource = "MAgPIEcalc", aggregate = "REG+GLO",
              file = valfile, append = TRUE, try = TRUE)
@@ -318,7 +318,7 @@ if (rev < 4.66) stop("mrvalidation(>= 2.34.0) does not support revision below 4.
              file = valfile, append = TRUE, try = TRUE)
   calcOutput(type = "ValidTotalLaborCosts", datasource = "GTAP", aggregate = "REG+GLO",
              file = valfile, append = TRUE, try = TRUE)
-calcOutput(type = "ValidCostsTransport", datasource = "GTAPwholesale", aggregate = FALSE,
+calcOutput(type = "ValidCostsTransport", datasource = "GTAPwholesale", aggregate = "REG+GLO",
              file = valfile, append = TRUE, try = TRUE)
 
   # Diversity indices

README.md

@@ -1,6 +1,6 @@
 # madrat data preparation for validation purposes
 
-R package **mrvalidation**, version **2.51.2**
+R package **mrvalidation**, version **2.51.3**
 
 [![CRAN status](https://www.r-pkg.org/badges/version/mrvalidation)](https://cran.r-project.org/package=mrvalidation) [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.4317826.svg)](https://doi.org/10.5281/zenodo.4317826) [![R build status](https://github.com/pik-piam/mrvalidation/workflows/check/badge.svg)](https://github.com/pik-piam/mrvalidation/actions) [![codecov](https://codecov.io/gh/pik-piam/mrvalidation/branch/master/graph/badge.svg)](https://app.codecov.io/gh/pik-piam/mrvalidation) [![r-universe](https://pik-piam.r-universe.dev/badges/mrvalidation)](https://pik-piam.r-universe.dev/builds)
 
@@ -39,7 +39,7 @@ In case of questions / problems please contact Benjamin Leon Bodirsky <bodirsky@
 
 To cite package **mrvalidation** in publications use:
 
-Bodirsky B, Wirth S, Karstens K, Humpenoeder F, Stevanovic M, Mishra A, Biewald A, Weindl I, Beier F, Chen D, Crawford M, Leip D, Molina Bacca E, Kreidenweis U, W. Yalew A, Humpenoeder F, von Jeetze P, Wang X, Dietrich J, Alves M (2023). _mrvalidation: madrat data preparation for validation purposes_. doi: 10.5281/zenodo.4317826 (URL: https://doi.org/10.5281/zenodo.4317826), R package version 2.51.2, <URL: https://github.com/pik-piam/mrvalidation>.
+Bodirsky B, Wirth S, Karstens K, Humpenoeder F, Stevanovic M, Mishra A, Biewald A, Weindl I, Beier F, Chen D, Crawford M, Leip D, Molina Bacca E, Kreidenweis U, W. Yalew A, Humpenoeder F, von Jeetze P, Wang X, Dietrich J, Alves M (2023). _mrvalidation: madrat data preparation for validation purposes_. doi: 10.5281/zenodo.4317826 (URL: https://doi.org/10.5281/zenodo.4317826), R package version 2.51.3, <URL: https://github.com/pik-piam/mrvalidation>.
 
 A BibTeX entry for LaTeX users is
 
@@ -48,7 +48,7 @@ A BibTeX entry for LaTeX users is
   title = {mrvalidation: madrat data preparation for validation purposes},
   author = {Benjamin Leon Bodirsky and Stephen Wirth and Kristine Karstens and Florian Humpenoeder and Mishko Stevanovic and Abhijeet Mishra and Anne Biewald and Isabelle Weindl and Felicitas Beier and David Chen and Michael Crawford and Debbora Leip and Edna {Molina Bacca} and Ulrich Kreidenweis and Amsalu {W. Yalew} and Florian {Humpenoeder } and Patrick {von Jeetze } and Xiaoxi Wang and Jan Philipp Dietrich and Marcos Alves},
   year = {2023},
-  note = {R package version 2.51.2},
+  note = {R package version 2.51.3},
   doi = {10.5281/zenodo.4317826},
   url = {https://github.com/pik-piam/mrvalidation},
 }