Merge branch 'master.dev' into 'master' #10
Workflow file for this run
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| name: cmake-ninja | |
| on: | |
| push: | |
| #pull_request: | |
| release: | |
| types: published | |
| jobs: | |
| build: | |
| # The CMake configure and build commands are platform agnostic and should work equally well on Windows or Mac. | |
| # You can convert this to a matrix build if you need cross-platform coverage. | |
| # See: https://docs.github.com/en/free-pro-team@latest/actions/learn-github-actions/managing-complex-workflows#using-a-build-matrix | |
| runs-on: ubuntu-latest | |
| # Use centos7 | |
| container: | |
| image: centos:7 | |
| options: --privileged | |
| steps: | |
| - name: Install GIT | |
| shell: bash | |
| run: | | |
| yum -y install https://packages.endpointdev.com/rhel/7/os/x86_64/endpoint-repo.x86_64.rpm | |
| yum -y install git | |
| git --version | |
| - name: Checkout repository including the .git directory | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Dependencies | |
| shell: bash | |
| run: | | |
| git config --global --add safe.directory '*' | |
| git status | |
| curl -L -O https://github.com/Kitware/CMake/releases/download/v3.16.4/cmake-3.16.4-Linux-x86_64.sh | |
| chmod +x cmake-3.16.4-Linux-x86_64.sh | |
| ./cmake-3.16.4-Linux-x86_64.sh --skip-license --prefix=/usr/local | |
| curl -L -O https://www.mirrorservice.org/sites/dl.fedoraproject.org/pub/epel/7/x86_64/Packages/p/p7zip-16.02-20.el7.x86_64.rpm | |
| curl -L -O https://www.mirrorservice.org/sites/dl.fedoraproject.org/pub/epel/7/x86_64/Packages/p/p7zip-plugins-16.02-20.el7.x86_64.rpm | |
| rpm -U --quiet p7zip-16.02-20.el7.x86_64.rpm | |
| rpm -U --quiet p7zip-plugins-16.02-20.el7.x86_64.rpm | |
| yum install -y epel-release | |
| yum install -y make libasan gcc-gfortran gcc-c++ unzip openblas-devel lapack-devel zlib-devel tree fuse-sshfs fuse-libs file openmpi-devel wget python3 | |
| groupadd fuse | |
| user="$(whoami)" | |
| usermod -a -G fuse "$user" | |
| curl -L -O https://github.com/ninja-build/ninja/releases/download/v1.11.1/ninja-linux.zip | |
| unzip ninja-linux.zip | |
| mv ./ninja /usr/bin | |
| curl -L -O https://github.com/linuxdeploy/linuxdeploy/releases/download/continuous/linuxdeploy-x86_64.AppImage | |
| chmod +x linuxdeploy-x86_64.AppImage | |
| - name: Install GNU GCC 8 | |
| shell: bash | |
| run: | | |
| yum install -y centos-release-scl | |
| yum install -y devtoolset-8-gcc* | |
| source /opt/rh/devtoolset-8/enable | |
| scl enable devtoolset-8 bash | |
| which gcc | |
| echo 'source /opt/rh/devtoolset-8/enable' >> ~/.bashrc | |
| echo 'scl enable devtoolset-8 bash' >> ~/.bashrc | |
| #GCC_DIR='/opt/rh/devtoolset-8/root/usr' | |
| GCC_DIR=$(dirname $(dirname $(which gcc))) | |
| echo 'export PATH="'${GCC_DIR}'/bin:$PATH"' >> ~/.bashrc | |
| echo 'export LD_LIBRARY_PATH="'${GCC_DIR}'/lib:$LD_LIBRARY_PATH"' >> ~/.bashrc | |
| echo 'export LD_LIBRARY_PATH="'${GCC_DIR}'/lib64:$LD_LIBRARY_PATH"' >> ~/.bashrc | |
| echo 'export CC="'${GCC_DIR}'/bin/gcc"' >> ~/.bashrc | |
| echo 'export GCC="'${GCC_DIR}'/bin/gcc"' >> ~/.bashrc | |
| echo 'export FC="'${GCC_DIR}'/bin/gfortran"' >> ~/.bashrc | |
| echo 'export F77="'${GCC_DIR}'/bin/gfortran"' >> ~/.bashrc | |
| echo 'export F90="'${GCC_DIR}'/bin/gfortran"' >> ~/.bashrc | |
| echo 'export CXX="'${GCC_DIR}'/bin/g++"' >> ~/.bashrc | |
| echo 'export FC="'${GCC_DIR}'/bin/gfortran"' >> ~/.bashrc | |
| CFLAGS='-march=generic -mtune=generic -O3 -pipe' | |
| echo 'CHOST="x86_64-pc-linux-gnu"' >> ~/.bashrc | |
| echo 'CFLAGS="'${CFLAGS}'"' >> ~/.bashrc | |
| echo 'CXXFLAGS="'${CFLAGS}'"' >> ~/.bashrc | |
| echo "=======================================================================" | |
| gcc --version | |
| cat ~/.bashrc | |
| echo "=======================================================================" | |
| - name: Install OpenMPI 4.1.0 | |
| run: | | |
| source ~/.bashrc | |
| yum install -y rdma-core-devel | |
| wget https://download.open-mpi.org/release/open-mpi/v4.1/openmpi-4.1.0.tar.gz | |
| tar -xvf openmpi-4.1.0.tar.gz | |
| cd openmpi-4.1.0 | |
| ./configure --enable-static --disable-dlopen --enable-mpi1-compatibility --prefix=/opt/openmpi/4.1.0 | |
| #./configure --enable-debug --enable-static --disable-dlopen --enable-mpi1-compatibility --prefix=/opt/openmpi/4.1.0 | |
| make -j && make install | |
| echo "=======================================================================" | |
| MPI_DIR='/opt/openmpi/4.1.0' | |
| echo 'MPI_DIR="'${MPI_DIR}'"' >> $GITHUB_ENV | |
| echo ${MPI_DIR} | |
| echo 'export MPI_DIR="'${MPI_DIR}'"' >> ~/.bashrc | |
| echo 'export PATH="'${MPI_DIR}'/bin:$PATH"' >> ~/.bashrc | |
| echo 'export LD_LIBRARY_PATH="'${MPI_DIR}'/lib:$LD_LIBRARY_PATH"' >> ~/.bashrc | |
| echo "=======================================================================" | |
| cat ~/.bashrc | |
| echo "=======================================================================" | |
| - name: Install HDF5 1.12.2 | |
| run: | | |
| source ~/.bashrc | |
| wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.12/hdf5-1.12.2/src/hdf5-1.12.2.tar.gz | |
| tar -xvf hdf5-1.12.2.tar.gz | |
| cd hdf5-1.12.2 | |
| ./configure --prefix=/opt/hdf5/1.12.2 --with-pic --enable-fortran --enable-parallel CC=$(which mpicc) CXX=$(which mpicxx) FC=$(which mpifort) | |
| #./configure --enable-build-mode=debug --prefix=/opt/hdf5/1.12.2 --with-pic --enable-fortran --enable-parallel CC=$(which mpicc) CXX=$(which mpicxx) FC=$(which mpifort) | |
| make -j && make install | |
| echo "=======================================================================" | |
| HDF5_DIR='/opt/hdf5/1.12.2' | |
| echo ${HDF5_DIR} | |
| echo 'HDF5_DIR="'${HDF5_DIR}'"' >> $GITHUB_ENV | |
| echo 'export HDF5_DIR="'${HDF5_DIR}'"' >> ~/.bashrc | |
| echo 'export HDF5_ROOT="'${HDF5_DIR}'"' >> ~/.bashrc | |
| echo 'export PATH="'${HDF5_DIR}'/include:$PATH"' >> ~/.bashrc | |
| echo 'export PATH="'${HDF5_DIR}'/bin:$PATH"' >> ~/.bashrc | |
| echo 'export LD_LIBRARY_PATH="'${HDF5_DIR}'/lib:$LD_LIBRARY_PATH"' >> ~/.bashrc | |
| echo "=======================================================================" | |
| cat ~/.bashrc | |
| echo "=======================================================================" | |
| - name: Install PETSc 3.18.4 | |
| run: | | |
| PETSCVERSION='3.18.4' | |
| source ~/.bashrc | |
| wget --no-check-certificate https://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-${PETSCVERSION}.tar.gz | |
| tar -xvf petsc-${PETSCVERSION}.tar.gz | |
| cd petsc-${PETSCVERSION} | |
| #--with-cc=$(which mpicc) \ | |
| #--with-cxx=$(which mpicxx) \ | |
| #--with-fc=$(which mpifort) \ | |
| ./configure \ | |
| PETSC_ARCH=arch-linux \ | |
| --prefix=/opt/petsc/${PETSCVERSION} \ | |
| --with-mpi-dir=${MPI_DIR} \ | |
| --with-debugging=0 \ | |
| COPTFLAGS='-O3 -march=native -mtune=native' \ | |
| CXXOPTFLAGS='-O3 -march=native -mtune=native' \ | |
| FOPTFLAGS='-O3 -march=native -mtune=native' \ | |
| --download-hypre \ | |
| --download-mumps \ | |
| --download-scalapack \ | |
| --download-fblaslapack=1 | |
| make -j && make install | |
| echo "=======================================================================" | |
| PETSC_DIR='/opt/petsc/'${PETSCVERSION} | |
| echo ${PETSC_DIR} | |
| echo 'export PETSC_DIR="'${PETSC_DIR}'"' >> ~/.bashrc | |
| echo 'export PATH="'${PETSC_DIR}'/bin:$PATH"' >> ~/.bashrc | |
| echo 'export LD_LIBRARY_PATH="'${PETSC_DIR}'/lib:$LD_LIBRARY_PATH"' >> ~/.bashrc | |
| echo 'export PETSC_ARCH=' >> ~/.bashrc | |
| echo "=======================================================================" | |
| cat ~/.bashrc | |
| echo "=======================================================================" | |
| - name: Configure CMake Piclas Single-core | |
| shell: bash | |
| # Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make. | |
| # See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type | |
| run: | | |
| source ~/.bashrc | |
| cmake -G Ninja -B build_single -DPICLAS_INSTRUCTION=-mtune=generic -DCMAKE_BUILD_TYPE=Release -DLIBS_USE_MPI=OFF -DLIBS_BUILD_HDF5=OFF -DPICLAS_BUILD_POSTI=ON -DPOSTI_BUILD_SUPERB=ON -DPICLAS_READIN_CONSTANTS=ON -DCMAKE_INSTALL_PREFIX=/usr | |
| - name: Build Piclas Single-core | |
| shell: bash | |
| run: | | |
| source ~/.bashrc | |
| cmake --build build_single | |
| - name: Configure CMake Piclas DSMC | |
| shell: bash | |
| # Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make. | |
| # See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type | |
| run: | | |
| source ~/.bashrc | |
| cmake -G Ninja -B build_DSMC -DPICLAS_INSTRUCTION=-mtune=generic -DPOSTI_BUILD_PICLAS2VTK=OFF -DPOSTI_BUILD_SUPERB=OFF -DPICLAS_POLYNOMIAL_DEGREE=1 -DPICLAS_TIMEDISCMETHOD=DSMC -DCMAKE_BUILD_TYPE=Release -DLIBS_USE_MPI=ON -DLIBS_BUILD_HDF5=OFF -DPICLAS_READIN_CONSTANTS=ON -DCMAKE_INSTALL_PREFIX=/usr | |
| - name: Build Piclas DSMC | |
| shell: bash | |
| run: | | |
| source ~/.bashrc | |
| cmake --build build_DSMC | |
| - name: Configure CMake Piclas Poisson Leapfrog | |
| shell: bash | |
| # Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make. | |
| # See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type | |
| run: | | |
| source ~/.bashrc | |
| cmake -G Ninja -B build_poisson_leapfrog -DPICLAS_INSTRUCTION=-mtune=generic -DPOSTI_BUILD_PICLAS2VTK=OFF -DPOSTI_BUILD_SUPERB=OFF -DPICLAS_TIMEDISCMETHOD=Leapfrog -DPICLAS_EQNSYSNAME=poisson -DPICLAS_PETSC=ON -DCMAKE_BUILD_TYPE=Release -DLIBS_USE_MPI=ON -DLIBS_BUILD_HDF5=OFF -DPICLAS_READIN_CONSTANTS=ON -DCMAKE_INSTALL_PREFIX=/usr | |
| #cmake -G Ninja -B build_poisson_leapfrog -DPICLAS_INSTRUCTION=-mtune=generic -DPOSTI_BUILD_PICLAS2VTK=OFF -DPOSTI_BUILD_SUPERB=OFF -DPICLAS_TIMEDISCMETHOD=Leapfrog -DPICLAS_EQNSYSNAME=poisson -DPICLAS_PETSC=OFF -DCMAKE_BUILD_TYPE=Release -DLIBS_USE_MPI=ON -DLIBS_BUILD_HDF5=OFF -DPICLAS_READIN_CONSTANTS=ON -DCMAKE_INSTALL_PREFIX=/usr | |
| - name: Build Piclas Poisson Leapfrog | |
| shell: bash | |
| run: | | |
| source ~/.bashrc | |
| cmake --build build_poisson_leapfrog | |
| - name: Create AppImages | |
| shell: bash | |
| run: | | |
| source ~/.bashrc | |
| echo "=======================================================================" | |
| ls -la build_single/bin | |
| echo "=======================================================================" | |
| cd build_single | |
| # Declare an array of strings | |
| declare -a PROGS=("piclas2vtk" "superB") | |
| # Iterate the string array | |
| for PROG in ${PROGS[@]}; do | |
| rm -rf AppDir | |
| DESTDIR=AppDir ninja install | |
| mkdir -p AppDir/usr/share/icons | |
| cp ../docs/logo.png AppDir/usr/share/icons/${PROG}.png | |
| mkdir -p AppDir/usr/share/icons/hicolor/64x64/apps/ | |
| ln -sf ../../../${PROG}.png AppDir/usr/share/icons/hicolor/64x64/apps/ | |
| cp ../.github/workflows/piclas.desktop template.desktop | |
| mv template.desktop ${PROG}.desktop | |
| sed -i -e "s/Name=.*/Name=${PROG}/" ${PROG}.desktop | |
| sed -i -e "s/Exec=.*/Exec=${PROG}/" ${PROG}.desktop | |
| sed -i -e "s/Icon=.*/Icon=${PROG}/" ${PROG}.desktop | |
| ./../linuxdeploy-x86_64.AppImage --appdir AppDir --output appimage --desktop-file=${PROG}.desktop | |
| done | |
| # Check folder contents | |
| ls -la | |
| cd .. | |
| echo "=======================================================================" | |
| ls -la build_DSMC/bin | |
| echo "=======================================================================" | |
| cd build_DSMC | |
| # Declare an array of strings | |
| declare -a PROGS=("piclas") | |
| # Iterate the string array | |
| for PROG in ${PROGS[@]}; do | |
| rm -rf AppDir | |
| DESTDIR=AppDir ninja install | |
| mkdir -p AppDir/usr/share/icons | |
| cp ../docs/logo.png AppDir/usr/share/icons/${PROG}.png | |
| mkdir -p AppDir/usr/share/icons/hicolor/64x64/apps/ | |
| ln -sf ../../../${PROG}.png AppDir/usr/share/icons/hicolor/64x64/apps/ | |
| cp ../.github/workflows/piclas.desktop template.desktop | |
| mv template.desktop ${PROG}.desktop | |
| sed -i -e "s/Name=.*/Name=${PROG}/" ${PROG}.desktop | |
| sed -i -e "s/Exec=.*/Exec=${PROG}/" ${PROG}.desktop | |
| sed -i -e "s/Icon=.*/Icon=${PROG}/" ${PROG}.desktop | |
| ./../linuxdeploy-x86_64.AppImage --appdir AppDir --output appimage --desktop-file=${PROG}.desktop | |
| done | |
| # Check folder contents | |
| ls -la | |
| cd .. | |
| echo "=======================================================================" | |
| ls -la build_poisson_leapfrog/bin | |
| echo "=======================================================================" | |
| cd build_poisson_leapfrog | |
| # Declare an array of strings | |
| declare -a PROGS=("piclas") | |
| # Iterate the string array | |
| for PROG in ${PROGS[@]}; do | |
| rm -rf AppDir | |
| DESTDIR=AppDir ninja install | |
| mkdir -p AppDir/usr/share/icons | |
| cp ../docs/logo.png AppDir/usr/share/icons/${PROG}.png | |
| mkdir -p AppDir/usr/share/icons/hicolor/64x64/apps/ | |
| ln -sf ../../../${PROG}.png AppDir/usr/share/icons/hicolor/64x64/apps/ | |
| cp ../.github/workflows/piclas.desktop template.desktop | |
| mv template.desktop ${PROG}.desktop | |
| sed -i -e "s/Name=.*/Name=${PROG}/" ${PROG}.desktop | |
| sed -i -e "s/Exec=.*/Exec=${PROG}/" ${PROG}.desktop | |
| sed -i -e "s/Icon=.*/Icon=${PROG}/" ${PROG}.desktop | |
| ./../linuxdeploy-x86_64.AppImage --appdir AppDir --output appimage --desktop-file=${PROG}.desktop | |
| done | |
| # Check folder contents | |
| ls -la | |
| cd .. | |
| - name: Create archives | |
| shell: bash | |
| run: | | |
| mkdir artifacts | |
| mkdir release-assets | |
| cp build_single/piclas2vtk*x86_64.AppImage piclas2vtk | |
| cp build_single/superB*x86_64.AppImage superB | |
| cp build_DSMC/piclas-*x86_64.AppImage piclasDSMC | |
| cp build_poisson_leapfrog/piclas-*x86_64.AppImage piclasLeapfrogHDG | |
| md5sum piclasDSMC > md5sum.txt | |
| md5sum piclasLeapfrogHDG >> md5sum.txt | |
| md5sum piclas2vtk >> md5sum.txt | |
| md5sum superB >> md5sum.txt | |
| cat md5sum.txt | |
| 7z a release-assets/piclas-linux64.zip piclasDSMC piclasLeapfrogHDG piclas2vtk superB md5sum.txt | |
| ls -la release-assets | |
| mv piclasDSMC piclasLeapfrogHDG piclas2vtk superB md5sum.txt artifacts/. | |
| ls -la artifacts | |
| - name: Upload artifacts | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: piclas-binaries-v3.2.0 | |
| path: artifacts | |
| - name: Upload release asset | |
| if: github.event.action == 'published' | |
| uses: actions/[email protected] | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| upload_url: ${{ github.event.release.upload_url }} | |
| asset_path: ./release-assets/piclas-linux64.zip | |
| asset_name: piclas-linux64.zip | |
| asset_content_type: application/zip | |