Skip to content

Issues: pharmai/plip

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

40 Open 71 Closed
40 Open 71 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

[Bug] In halogen bonds ligand coordinate is assigned to "protcoo"
#166 opened Dec 18, 2024 by andrew0901
OverflowError: Python integer -1000 out of bounds for uint32 int32_to_negative(int32) in supplemental.py
#157 opened Aug 16, 2024 by gmrandazzo
Request for Official PLIP User Manual and Python Usage Documentation
#156 opened Jul 19, 2024 by Mengo-ye
Question about function plip.structure.detection.halogen
#155 opened May 16, 2024 by ivandon15
How to get Information on sidechain/backbone hydrogen bond type in command options?
#154 opened Mar 31, 2024 by JeongSooNa
Incorrectly indexed interacting residues
#148 opened Dec 12, 2023 by kaw97
2
Extract interaction specifically for RNA-small molecule ligand and exclude other interactions in the output
#147 opened Oct 14, 2023 by JiayiLi21
MmCIF support
#146 opened Sep 29, 2023 by xrobin
1
conf.NOHYDRO and aromatics
#143 opened Jul 24, 2023 by matteoferla
The ligand structure is not visible.
#142 opened Mar 29, 2023 by Tangbbmc
supplemental.py:90: RuntimeWarning: invalid value encountered in arccos
#141 opened Feb 28, 2023 by MXC66ai
Option not to add whitespace after trimming
#140 opened Feb 8, 2023 by baoilleach
Generated RST file missing blank line after section titles
#139 opened Feb 8, 2023 by baoilleach
Calculate and report interactions for just one amino acid residue
#138 opened Dec 11, 2022 by cesaravila79
Segmentation error with pdb files:
#137 opened Dec 6, 2022 by sgrannem
1
<< PLIP took forever >>
#136 opened Nov 18, 2022 by icamps
pymol.CmdException: Error: Object not found
#135 opened Sep 22, 2022 by Le-Phung-Hien
Batch mode for protein-peptide
#134 opened Aug 31, 2022 by victorconan
How to go about finding interacting Amino Acid Residues of ~1 billion compounds (In PDBQT)
#133 opened Aug 17, 2022 by eschoo
1
Traceback (most recent call last): File "/plip/plip/plipcmd.py", line 16, in <module> from plip.basic import config, logger ModuleNotFoundError: No module named 'plip'
#132 opened Aug 15, 2022 by MarcAmil30
1
python module stuck in loop with some pdb files
#131 opened Jul 26, 2022 by ydzdfci
Openbabel package name conflict
#130 opened Jul 25, 2022 by klsarathk
3
XML filename shouldn't be report.xml
#129 opened May 4, 2022 by pslacerda
2
Add explanation for OpenBabel atom groups to README enhancement
#125 opened Mar 17, 2022 by fkaiserbio
Is there a bug on waterbridge atom index? enhancement
#121 opened Jan 19, 2022 by freeenergylab
1
ProTip! Adding no:label will show everything without a label.