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Widefield alignment
Andy Peters edited this page Jul 29, 2019
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Usage:
- Set path to save alignments (first line in AP_align_widefield)
- Create master alignment reference ('create_master') from average aligned VFSs from multiple animals
- Across-day align ('new_days') using vasulature from all days of one animal
- Across-animal align ('new_animal) using the aligned average VFS from new animal
- Apply saved alignments to any images (specifying animal and day source)
(readme in progress)