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Widefield alignment

Andy Peters edited this page Jul 29, 2019 · 15 revisions

AP_align_widefield

Usage:

  1. Set path to save alignments (first line in AP_align_widefield)
  2. Create master alignment reference ('create_master') from average aligned VFSs from multiple animals
  3. Across-day align ('new_days') using vasulature from all days of one animal
  4. Across-animal align ('new_animal) using the aligned average VFS from new animal
  5. Apply saved alignments to any images (specifying animal and day source)

(readme in progress) test image

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