Hello World! example for looper

This repository provides minimal working examples for the looper pipeline submission engine.

This repository contains examples

1. /looper_csv_example - A minimal example using only csv for metadata.
2. /pep_derived_attrs - An basic example utilizing the PEP specification for metadata and deriving attributes from the metadata
3. /pephub - Example of how to point looper to a PEP stored on PEPhub and running a pipeline.
4. /pipestat_example - Example on how to use pipestat to report pipeline results when using looper.
5. /input_schema_example - Example on how to use input schemas when using looper.

Each example contains:

1. A looper config file (.looper.yaml).
2. Sample data plus metadata in PEP format (or pointer to PEPhub).
3. A looper-compatible pipeline.

Explanation and results of running the above examples can be found at Looper: User Tutorial