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    24 repositories

    • lab-webpage

      Public
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•1•Updated Jan 2, 2025Jan 2, 2025

    • boms

      Public
      A tool for segmenting cells in imaging-based spatial transcriptomics data
      C++
      •
      MIT License
      •3•2•0•0•Updated Dec 21, 2024Dec 21, 2024

    • mlph_w24

      Public
      Jupyter Notebook
      •13•14•0•0•Updated Dec 16, 2024Dec 16, 2024

    • CP_RBC_Pfalciparum

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Dec 5, 2024Dec 5, 2024

    • Truth_is_Universal

      Public
      Jupyter Notebook
      •
      MIT License
      •2•15•0•0•Updated Nov 7, 2024Nov 7, 2024

    • SynCellFactory

      Public
      Official code repository for the 2024 MICCAI paper "SynCellFactory: Generative Data Augmentation for Cell Tracking"
      Python
      •0•0•0•0•Updated Sep 16, 2024Sep 16, 2024

    • gmlqc-sheets

      Public
      Sheets for the lecture Geometric Machine Learning in Quantum Chemistry
      Jupyter Notebook
      •3•4•0•0•Updated Jul 18, 2024Jul 18, 2024

    • ne-spectrum

      Public
      Python
      •
      MIT License
      •0•6•0•0•Updated Apr 30, 2024Apr 30, 2024

    • CST

      Public
      Code of the Central Spanning Tree
      Jupyter Notebook
      •0•0•0•0•Updated Apr 29, 2024Apr 29, 2024

    • GeometricAutoencoder

      Public
      Code for the ICML 2023 paper "Geometric Autoencoders - What You See is What You Decode"
      Python
      •
      Other
      •2•4•0•0•Updated Jul 28, 2023Jul 28, 2023

    • BranchedOT

      Public
      Jupyter Notebook
      •
      MIT License
      •2•12•0•2•Updated Jul 17, 2023Jul 17, 2023

    • cl-tsne-umap

      Public
      Jupyter Notebook
      •
      MIT License
      •1•33•1•0•Updated Feb 28, 2023Feb 28, 2023

    • celltype-graph-benchmark

      Public
      A new graph benchmark for node classification
      Python
      •
      MIT License
      •0•8•0•0•Updated Nov 17, 2022Nov 17, 2022

    • UMAPs-true-loss

      Public
      Uniform Manifold Approximation and Projection
      Python
      •
      Other
      •810•11•0•0•Updated Oct 27, 2021Oct 27, 2021

    • Directed_Probabilistic_Watershed

      Public
      Python
      •0•0•0•0•Updated Oct 20, 2021Oct 20, 2021

    • YeastCellSeg

      Public
      Python
      •1•0•0•0•Updated Aug 4, 2021Aug 4, 2021

    • mutex-watershed

      Public
      The mutex watershed for image segmentation.
      segmentationwatershedeccv2018isbi-segmentation-challengemutex-watershed
      Python
      •13•63•3•0•Updated May 6, 2021May 6, 2021

    • batchlib

      Public
      Batch procesing for high-throughput screening data
      Jupyter Notebook
      •
      MIT License
      •0•3•11•1•Updated Feb 4, 2021Feb 4, 2021

    • MultiStar

      Public
      Python
      •1•6•1•0•Updated Jan 29, 2021Jan 29, 2021

    • DTAE

      Public
      Python
      •0•6•0•0•Updated Jan 27, 2021Jan 27, 2021

    • pytorch-LearnedRandomWalker

      Public
      Pytorch implementation of the LearnedRandomWalker module
      Python
      •
      MIT License
      •2•29•0•0•Updated Oct 28, 2020Oct 28, 2020

    • covid-if-annotations

      Public
      Annotation Tool for Immunofluorescence Assay Images
      Python
      •
      MIT License
      •4•2•10•0•Updated Jun 23, 2020Jun 23, 2020

    • Probabilistic_Watershed

      Public
      Python
      •0•10•0•0•Updated Jan 7, 2020Jan 7, 2020

    • fastfilters

      Public
      fast convolutional image filters
      software
      C++
      •
      MIT License
      •0•2•0•0•Updated Nov 14, 2018Nov 14, 2018