Pittsburgh Supercomputing Center

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183 repositories

psc-wpdocs
Public
WeDocs repo for documentation on PSC.edu
4•1•1•0•Updated Nov 3, 2024Nov 3, 2024
singularity-imagemagick
Public
Use ImageMagick® to create, edit, compose, or convert digital images.
utilities singularity image-processing
Shell
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Apache License 2.0
•0•0•1•0•Updated Oct 24, 2024Oct 24, 2024
singularity-mc
Public
GNU Midnight Commander is a visual file manager, licensed under GNU General Public License and therefore qualifies as Free Software.
utilities singularity
Lua
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Apache License 2.0
•0•0•0•0•Updated Oct 24, 2024Oct 24, 2024
singularity-ncdu
Public
ncdu is a disk utility for Unix systems
utilities singularity
Shell
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Apache License 2.0
•0•0•0•0•Updated Oct 24, 2024Oct 24, 2024
singularity-dust
Public
du + rust = dust. Like du but more intuitive.
utilities singularity
Shell
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Apache License 2.0
•0•0•0•0•Updated Oct 24, 2024Oct 24, 2024
singularity-dua
Public
View disk space usage and delete unwanted data, fast.
utilities singularity
Shell
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Apache License 2.0
•0•0•0•0•Updated Oct 23, 2024Oct 23, 2024
singularity-visidata
Public
VisiData is an interactive multitool for tabular data.
utilities singularity
Shell
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Apache License 2.0
•1•0•0•0•Updated Oct 20, 2024Oct 20, 2024
singularity-hyperfine
Public
A command-line benchmarking tool.
utilities singularity
Shell
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Apache License 2.0
•0•0•1•0•Updated Oct 18, 2024Oct 18, 2024
singularity-giotto
Public
Giotto Suite is a major upgrade to the Giotto package that provides tools to process, analyze and visualize spatial multi-omics data at all scales and multiple resolutions.
R
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Apache License 2.0
•0•0•0•0•Updated Oct 13, 2024Oct 13, 2024
singularity-bioformats2raw
Public
Bio-Formats image file format to raw format converter.
utilities image-processing singularity
Shell
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Apache License 2.0
•0•0•0•0•Updated Aug 25, 2024Aug 25, 2024
singularity-nanoplot
Public
Plotting scripts for long read sequencing data
Shell
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Apache License 2.0
•0•0•0•0•Updated Jun 6, 2024Jun 6, 2024
singularity-beast2
Public
BEAST 2 is a cross-platform program for Bayesian phylogenetic analysis of molecular sequences.
Shell
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Apache License 2.0
•0•0•0•0•Updated May 30, 2024May 30, 2024
bridges2-examples
Public
Different job examples running on Bridges-2
Jupyter Notebook
•1•7•0•0•Updated May 24, 2024May 24, 2024
singularity-pandoc
Public
Pandoc is a free and open-source document converter, widely used as a writing tool and as a basis for publishing workflows.
utilities singularity
Shell
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Apache License 2.0
•1•0•0•0•Updated May 13, 2024May 13, 2024
singularity-canu
Public
Lua
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Apache License 2.0
•0•0•0•0•Updated May 8, 2024May 8, 2024
singularity-graphviz
Public
Graphviz is a package of open-source tools initiated by AT&T Labs Research for drawing graphs specified in DOT language scripts.
utilities singularity
Shell
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Apache License 2.0
•0•0•0•0•Updated May 8, 2024May 8, 2024
practical-intro-to-apptainer
Public
Exercises for the "Practical Intro to Apptainer in Bridges-2"
Roff
•0•0•0•0•Updated Apr 30, 2024Apr 30, 2024
singularity-guppy
Public
Guppy is a data processing toolkit that contains the Oxford Nanopore Technologies’ basecalling algorithms.
bioinformatics singularity
Shell
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Apache License 2.0
•0•0•0•0•Updated Apr 18, 2024Apr 18, 2024
ml4docs
Public
Machine Learning for Docs projects developed in collaboration with Prof. Raja Adal at Pitt.
0•1•0•0•Updated Apr 13, 2024Apr 13, 2024
ml4docs-automation
Public
Shell
•0•0•0•0•Updated Apr 12, 2024Apr 12, 2024
neocortex-public
Public
Jupyter Notebook
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BSD 2-Clause "Simplified" License
•1•3•0•0•Updated Mar 29, 2024Mar 29, 2024
singularity-circos
Public
Circos is a software package for visualizing data and information.
singularity utlities
Singularity
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Apache License 2.0
•0•0•0•0•Updated Mar 29, 2024Mar 29, 2024
singularity
Public
Just a list of Singularity definition files maintained by the Biomed Applications Group
singularity biomedical-informatics containerization biomedical-data-science
Python
•0•0•0•0•Updated Mar 28, 2024Mar 28, 2024
singularity-filtlong
Public
Quality filtering tool for long reads
bioinformatics singularity
Shell
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Apache License 2.0
•0•0•0•0•Updated Mar 28, 2024Mar 28, 2024
singularity-porechop
Public
Adapter trimmer for Oxford Nanopore reads
bioinformatics singularity
Shell
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Apache License 2.0
•0•0•0•0•Updated Mar 28, 2024Mar 28, 2024
apptainer-singularityce
Public
Singularity Community Edition is 100% open source, BSD licensed software available for free.
utilities open-science containerization
Lua
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Apache License 2.0
•0•0•0•0•Updated Mar 8, 2024Mar 8, 2024
apptainer-lowcharts
Public
lowcharts is meant to be used in those scenarios where we have numerical data in text files that we want to display in the terminal to do a basic analysis.
utilities apptainer
Shell
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Apache License 2.0
•0•0•0•0•Updated Mar 6, 2024Mar 6, 2024
apptainer
Public
Just a list of Apptainer definition files maintained by the Biomed Applications Group
biomedical-informatics containerization biomedical-data-science apptainer
Python
•0•0•0•0•Updated Mar 5, 2024Mar 5, 2024
apptainer-asciigenome
Public
Shell
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Apache License 2.0
•0•0•0•0•Updated Mar 5, 2024Mar 5, 2024
apptainer-chalk-cli
Public
About Terminal string styling done right
utilities apptainer
Shell
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Apache License 2.0
•0•0•0•0•Updated Mar 5, 2024Mar 5, 2024