Repositories list

• phenotype_extraction_update

  Public
  R

  •0•0•0•0•Updated Nov 4, 2024Nov 4, 2024

• automation

  Public
  Modular, Scalable Phenomic Data Processing Pipelines

  pythondistributed-computingplant+ 9phenotypinglettucephenomicssorghumworkqueueplant-phenotypingmakeflow+ 2

  Python

  •

  MIT License

  •4•5•2•2•Updated Aug 9, 2024Aug 9, 2024

• 3d_transformation_selection

  Public
  Python

  •0•0•3•0•Updated Aug 7, 2024Aug 7, 2024

• 3d_neighbor_removal

  Public
  Python

  •1•0•0•0•Updated Jun 21, 2024Jun 21, 2024

• rgb_plant_clustering

  Public
  Clustering of plant identifications over a season for individual plant tracking

  Python

  •2•0•0•0•Updated Jun 18, 2024Jun 18, 2024

• 3d_entropy_features

  Public
  Python

  •0•0•0•0•Updated Jun 15, 2024Jun 15, 2024

• phytooracle_data

  Public
  Python

  •0•0•2•0•Updated Jun 12, 2024Jun 12, 2024

• panicle_gt_mp_association

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jun 11, 2024Jun 11, 2024

• 3d_landmark_selection

  Public
  3D Module: GUI for point cloud landmark selection

  Python

  •

  MIT License

  •0•0•1•0•Updated Jun 9, 2024Jun 9, 2024

• 3d_orthomosaic_generator

  Public
  Python

  •0•0•0•0•Updated Jun 9, 2024Jun 9, 2024

• psii_fluorescence_aggregation

  Public
  Aggregate PSII fluorescence segmentation outputs to Fv/Fm

  Python

  •0•0•0•0•Updated Jun 9, 2024Jun 9, 2024

• psii_segmentation

  Public
  Segmentation of pixels to experimentally-determined Fv/Fm contributions

  Python

  •0•0•0•0•Updated Jun 9, 2024Jun 9, 2024

• psii_bin_to_tif

  Public
  Conversion of PSII fluorescence bin files to GeoTIFF images

  Python

  •0•0•0•0•Updated Jun 9, 2024Jun 9, 2024

• flir_plant_temp

  Public
  Extraction of mean temperatures of individual plants

  Python

  •0•0•1•0•Updated Jun 9, 2024Jun 9, 2024

• flir_bin_to_tif_s11

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•0•0•Updated Jun 9, 2024Jun 9, 2024

• rgb_bin_to_tif

  Public
  RGB bin file conversion to geoTIFF

  Python

  •0•0•0•0•Updated Jun 9, 2024Jun 9, 2024

• rgb_flir_plant_detection

  Public
  Detection of individual plants (RGB/FLIR) using a Faster R-CNN detection network

  Python

  •1•1•0•0•Updated Jun 8, 2024Jun 8, 2024

• rgb_flir_stitch_plots

  Public
  Stitching of geoTiff images (RGB/FLIR) into agricultural plots

  Python

  •0•0•0•0•Updated Jun 8, 2024Jun 8, 2024

• rgb_flir_plot_clip_geojson

  Public
  RGB/FLIR clipping to agricultural plots

  Python

  •0•0•0•0•Updated Jun 8, 2024Jun 8, 2024

• rgb_flir_edit_gps

  Public
  Edit corner coordinates of RGB/FLIR geoTIFFs

  Python

  •0•0•0•1•Updated Jun 8, 2024Jun 8, 2024

• rgb_flir_collect_gps

  Public
  Collection of corner coordinates for RGB/FLIR geoTIFFs

  Python

  •0•1•0•1•Updated Jun 8, 2024Jun 8, 2024

• uav_plot_clip

  Public
  Python

  •0•0•0•0•Updated Jun 8, 2024Jun 8, 2024

• rgb_tgi_extraction

  Public
  Python

  •0•0•0•0•Updated Jun 8, 2024Jun 8, 2024

• rgb_panicle_detection

  Public
  Python

  •0•0•0•0•Updated Jun 4, 2024Jun 4, 2024

• rnaseq_spectral_plsr

  Public
  RNA-Seq|Hyperspectral Module: Partial least squares regression on transcript expression and hyperspectral data

  Python

  •1•0•0•0•Updated May 26, 2024May 26, 2024

• ezobde

  Public
  EZOBDE | EaZy Object Detection

  Python

  •0•2•0•0•Updated May 3, 2024May 3, 2024

• 3d_transformation_prediction

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Apr 25, 2024Apr 25, 2024

• rnaseq_spectral_pre_processing

  Public
  RNA-Seq|Hyperspectral Module: Combine RNA-Seq and spectral data and generate CSV files for each transcript.

  Python

  •0•0•0•0•Updated Feb 21, 2024Feb 21, 2024

• streamlit_dashboard

  Public
  A streamlit dashboard to visualize plant detections

  Python

  •

  MIT License

  •1•0•0•0•Updated Feb 19, 2024Feb 19, 2024

• environmental_association

  Public
  Environmental association for thermal and PS2 data from the gantry.

  Jupyter Notebook

  •1•0•3•0•Updated Feb 6, 2024Feb 6, 2024