Repositories list

• omero-plugins

  Public
  Collection of OMERO extensions (plugins, apps)

  ecosystembuildplugins+ 2omerometa-repo

  7•0•1•5•Updated Dec 5, 2024Dec 5, 2024

• upptime

  Public
  📈 Uptime monitor and status page for OME, powered by @upptime

  uptime-monitorstatus-pageupptime

  Markdown

  •

  MIT License

  •1•1•2•0•Updated Dec 5, 2024Dec 5, 2024

• omero-py

  Public
  Python project containing Ice remoting code for OMERO

  pythoncomponentlib+ 1omero

  Python

  •

  GNU General Public License v2.0

  •32•22•76•15•Updated Dec 4, 2024Dec 4, 2024

• ngff

  Public
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  data-sciencecloudspec+ 2bioimagingfile-formats

  Bikeshed

  •

  Other

  •41•120•91•19•Updated Dec 4, 2024Dec 4, 2024

• omero-cli-render

  Public
  OMERO command-line tool for rendering

  pythonplugincli+ 2commandomero

  Python

  •

  GNU General Public License v2.0

  •10•2•5•2•Updated Dec 4, 2024Dec 4, 2024

• omero-metadata

  Public
  OMERO plugin for metadata manipulation https://www.openmicroscopy.org/omero/

  climetadataomero

  Python

  •

  GNU General Public License v2.0

  •13•8•20•2•Updated Dec 3, 2024Dec 3, 2024

• presentations

  Public
  HTML-based presentations from the OME team.

  reveal-jspresentationshtml

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •19•0•0•0•Updated Dec 3, 2024Dec 3, 2024

• ome2024-ngff-challenge

  Public
  Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data

  ome-ngffome-zarr-converter

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •14•15•7•4•Updated Dec 2, 2024Dec 2, 2024

• omero-documentation

  Public
  Sphinx-based documentation for the Open Microscopy Environment

  documentationomeroome

  Python

  •

  BSD 2-Clause "Simplified" License

  •51•22•27•6•Updated Nov 30, 2024Nov 30, 2024

• prod-playbooks

  Public
  Playbooks used by the OME team for deploying production services including OMERO

  ansibledeploymentproduction+ 2playbooksomero

  Jinja

  •

  BSD 2-Clause "Simplified" License

  •18•4•11•1•Updated Nov 29, 2024Nov 29, 2024

• omero-figure

  Public
  An OMERO.web app for creating Figures from images in OMERO

  webappomero

  JavaScript

  •

  GNU Affero General Public License v3.0

  •31•15•66•5•Updated Nov 28, 2024Nov 28, 2024

• bio-formats-build

  Public
  Bio-Formats top-level build for all components

  buildbio-formatsmeta-repo

  Shell

  •10•0•1•5•Updated Nov 27, 2024Nov 27, 2024

• bio-formats-documentation

  Public
  Bio-Formats documentation

  documentationbio-formats

  Java

  •

  BSD 2-Clause "Simplified" License

  •17•8•1•0•Updated Nov 27, 2024Nov 27, 2024

• omero-mapr

  Public
  An OMERO.web app allowing to browse the data through attributes linked to the image

  pluginimageviewer+ 1omero

  Python

  •

  GNU Affero General Public License v3.0

  •13•5•17•2•Updated Nov 27, 2024Nov 27, 2024

• ome-codecs

  Public
  OME image compression (coder-decoder implementations)

  codecs

  Java

  •

  Other

  •13•4•2•0•Updated Nov 27, 2024Nov 27, 2024

• ome-zarr-py

  Public
  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  omezarrngff+ 1ome-zarr

  Python

  •

  Other

  •54•161•61•13•Updated Nov 26, 2024Nov 26, 2024

• minimal-omero-client

  Public
  gradlemavenexample+ 2omerojava

  Java

  •14•1•2•0•Updated Nov 26, 2024Nov 26, 2024

• omero-iviewer

  Public
  An OMERO.web app allowing to view images

  webappomero

  JavaScript

  •

  Other

  •30•19•58•6•Updated Nov 26, 2024Nov 26, 2024

• omero-gallery

  Public
  webappomero

  JavaScript

  •

  GNU Affero General Public License v3.0

  •15•5•20•6•Updated Nov 26, 2024Nov 26, 2024

• omero-python-superbuild

  Public
  OMERO build for Python server components

  pythonbuildomero+ 1meta-repo

  4•0•1•0•Updated Nov 26, 2024Nov 26, 2024

• yaclifw

  Public
  Yet Another CLI Framework

  pypipython

  Python

  •

  GNU General Public License v2.0

  •5•0•1•0•Updated Nov 25, 2024Nov 25, 2024

• ome-model

  Public
  OME model (specification, code generator, implementation)

  imageschemadata-model+ 3specificationcode-generationome-model

  XSLT

  •

  Other

  •26•14•15•0•Updated Nov 25, 2024Nov 25, 2024

• ome-contributing

  Public
  5•1•0•1•Updated Nov 25, 2024Nov 25, 2024

• omero-marshal

  Public
  OMERO marshalling infrastructure

  modelmarshallingpip+ 1omero

  Python

  •

  GNU General Public License v2.0

  •11•3•4•3•Updated Nov 25, 2024Nov 25, 2024

• cookiecutter-omero-cli-plugin

  Public
  Cookiecutter for OMERO.cli plugins

  Python

  •3•2•1•0•Updated Nov 24, 2024Nov 24, 2024

• omero-fpbioimage

  Public
  FPBioImage as an OMERO.web app

  Python

  •3•2•4•1•Updated Nov 24, 2024Nov 24, 2024

• omero-openwith-url

  Public
  An OMERO.web plugin for opening images via configured URLs

  Python

  •2•0•0•0•Updated Nov 24, 2024Nov 24, 2024

• omero-web

  Public
  Django-based OMERO.web client

  pythonclientdjango+ 2webomero

  Python

  •31•17•127•10•Updated Nov 22, 2024Nov 22, 2024

• omero-certificates

  Public
  OMERO server certificate management plugin

  pluginclideployment+ 3servercertificatesomero

  Python

  •

  GNU General Public License v2.0

  •7•0•2•1•Updated Nov 22, 2024Nov 22, 2024

• omero-build

  Public
  OMERO top-level build for all components

  buildomerometa-repo

  Dockerfile

  •7•1•3•0•Updated Nov 22, 2024Nov 22, 2024