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    80 repositories

    • interbrc-microbiome

      Public
      Materials for the DOE Inter-BRC Microbiome Workshop (Ames, IA, 2024)
      Ruby
      •
      MIT License
      •1•0•0•2•Updated Sep 16, 2024Sep 16, 2024

    • germs-lab.github.com

      Public
      GERMS Lab Research Website
      SCSS
      •
      Other
      •2.5k•1•0•0•Updated Sep 11, 2024Sep 11, 2024

    • brc-data

      Public
      R
      •0•0•0•0•Updated Sep 11, 2024Sep 11, 2024

    • SOPs

      Public
      Roff
      •
      MIT License
      •5•1•0•0•Updated Jul 16, 2024Jul 16, 2024

    • PAPER_miscanthus_soil_response

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 14, 2024Feb 14, 2024

    • MetaFunPrimer

      Public
      A qPCR primer design pipeline to target environmentally abundant functional genes
      C
      •
      MIT License
      •3•1•0•0•Updated Oct 11, 2023Oct 11, 2023

    • oilcane

      Public
      R
      •1•0•0•0•Updated Apr 19, 2023Apr 19, 2023

    • DARTE-QM

      Public
      HTML
      •2•0•0•0•Updated Jan 3, 2022Jan 3, 2022

    • IA_Lake_Microcystin

      Public
      Shell
      •1•0•0•0•Updated Nov 8, 2021Nov 8, 2021

    • pit_foaming_manuscript

      Public
      codes, functions, and scripts for swine manure foaming manuscript
      R
      •
      MIT License
      •0•0•0•0•Updated Feb 26, 2021Feb 26, 2021

    • brc-tutorial

      Public
      Repository for microbiome workshop files
      R
      •
      GNU General Public License v3.0
      •22•0•0•0•Updated Jan 22, 2021Jan 22, 2021

    • evaluatePCR

      Public
      An R package to evaluate PCR results
      R
      •1•1•0•0•Updated Jan 17, 2021Jan 17, 2021

    • blast_crash_course

      Public
      Teaching complete beginners their first command line BLAST.
      bioinformaticsbeginner-friendlyworkshopblast
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Nov 17, 2020Nov 17, 2020

    • ec2-init

      Public
      Shell
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Nov 10, 2020Nov 10, 2020

    • ncbi-scripts

      Public
      HTML
      •12•0•0•0•Updated Nov 2, 2020Nov 2, 2020

    • biomark-bioinformatics

      Public
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 29, 2020Oct 29, 2020

    • LAMPS-miscanthus-microbiome

      Public
      Analysis files to accompany our sumbmitted paper characterizing the LAMPS Miscanthus Microbiome.
      MIT License
      •1•1•0•0•Updated Aug 27, 2020Aug 27, 2020

    • biomark-data-dev

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 22, 2020May 22, 2020

    • simple.dada

      Public
      R package to simplify the DADA2 pipeline.
      R
      •1•0•0•0•Updated Jan 23, 2020Jan 23, 2020

    • dada-msu-hpc

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 31, 2019Oct 31, 2019

    • neon-data-tools

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 19, 2019Jun 19, 2019

    • germs-dev

      Public
      Random scripts for GERMSies
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 22, 2019May 22, 2019

    • wafergen-analysis-tutorial

      Public
      HTML
      •0•0•3•0•Updated Apr 22, 2019Apr 22, 2019

    • wafergen-analylsis-legacy

      Public
      Old files on wafergen analysis that were homeless
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 22, 2019Apr 22, 2019

    • metag-pipeline

      Public
      Shell
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Mar 26, 2019Mar 26, 2019

    • ARG_database_parser

      Public
      scripts for GERMS!
      Python
      •2•0•0•0•Updated Jun 27, 2018Jun 27, 2018

    • softwarecarpentry

      Public
      Tutorials for Data Science Prowess
      Jupyter Notebook
      •
      Other
      •5•0•0•0•Updated Jun 25, 2018Jun 25, 2018

    • ec2-tutorials

      Public
      Tutorials on Cloud Computing
      MIT License
      •1•0•0•0•Updated Jun 25, 2018Jun 25, 2018

    • one-day-metag-crash-course

      Public
      GNU General Public License v3.0
      •2•0•2•1•Updated May 21, 2018May 21, 2018

    • cobs-study

      Public
      R
      •0•0•0•0•Updated Mar 22, 2018Mar 22, 2018