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    • is a bioinformatics best-practice analysis pipeline for alignment for our control DNA
      Nextflow
      MIT License
      0000Updated Oct 7, 2024Oct 7, 2024
    • OCI + Singularity Container Registry
      Python
      MIT License
      18101Updated Jan 25, 2023Jan 25, 2023
    • Development Container for Hinkskalle
      Dockerfile
      0000Updated Oct 17, 2022Oct 17, 2022
    • Command Line Interface and Python API for Forskalle
      Python
      0000Updated May 17, 2022May 17, 2022
    • Talking to Hinkskalle
      Python
      MIT License
      1000Updated May 6, 2022May 6, 2022
    • Generate typescript + python classes from Swagger/OpenAPI 2 definitions
      Python
      MIT License
      0000Updated Apr 25, 2022Apr 25, 2022
    • simple small API for our superior in house LIMS built by Heinz
      R
      GNU General Public License v2.0
      0100Updated Apr 24, 2022Apr 24, 2022
    • rnaseq

      Public
      RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
      Nextflow
      MIT License
      713000Updated May 13, 2021May 13, 2021
    • SQANTI2

      Public
      Private repo for Liz's modified SQANTI
      Python
      Other
      15000Updated Apr 8, 2019Apr 8, 2019
    • Miscellaneous collection of Python and R scripts for processing Iso-Seq data
      Python
      BSD 3-Clause Clear License
      104000Updated Mar 28, 2019Mar 28, 2019
    • Parses and Plots Illumina SAV files
      JavaScript
      GNU General Public License v2.0
      11310Updated Jan 30, 2019Jan 30, 2019
    • small backup program that copies the important files from illumina sequencing runs
      Scala
      1210Updated Jun 13, 2018Jun 13, 2018
    • extraction of Illumina SureCell UMI protocol. Compatible with umi-tools
      Python
      0130Updated Aug 30, 2017Aug 30, 2017
    • bam2fq

      Public
      bam to fastq converter ui
      Java
      0100Updated Aug 3, 2016Aug 3, 2016
    • Java
      15000Updated Jan 15, 2016Jan 15, 2016
    • fadapa

      Public
      FAstqc DAta PArser - A minimal parser to parse FastQC output data.
      Python
      11000Updated Mar 3, 2015Mar 3, 2015
    • Metrix

      Public
      A Server / Client parser for Illumina InterOp sequencer run metrics written in Java 7.0.
      Java
      Other
      5000Updated Jun 17, 2013Jun 17, 2013
    • sga

      Public
      de novo sequence assembler using string graphs
      C++
      82000Updated Mar 12, 2013Mar 12, 2013
    • fastqc

      Public
      csf fork of fastqc for usage on selected reads of unaligned bam file
      Java
      GNU General Public License v3.0
      414900Updated Mar 7, 2013Mar 7, 2013