Centro Austral de Tecnología Genómica

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7 repositories

ont-basecalling-demultiplexing
Public
Nextflow pipeline for basecalling / demultiplexing ONT data, using Dorado
oxford-nanopore dorado demultiplexing nextflow-pipeline basecalling
Nextflow
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MIT License
•2•0•0•0•Updated Oct 25, 2024Oct 25, 2024
inach-workshop-2024
Public
Typst
•0•1•0•0•Updated Oct 4, 2024Oct 4, 2024
sc-bcr-shm-variant
Public
Julia
•0•0•0•0•Updated May 17, 2024May 17, 2024
ncov2019-ont-nf
Public
Nextflow pipeline to process SARS-CoV-2 genomes by Nanopore Sequencing using ARTIC (https://github.com/artic-network/fieldbioinformatics) tools
pipeline nextflow oxford-nanopore artic ncov-2019 sars-cov-2
Python
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MIT License
•1•2•0•0•Updated Aug 21, 2023Aug 21, 2023
review-long-covid-ml
Public
Support repository for review "The role of machine learning in health policies during the COVID-19 pandemic and in long COVID management"
review long-covid machine-learning
Python
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MIT License
•0•0•0•0•Updated Apr 14, 2023Apr 14, 2023
bcell-lymphomas-mutational-signatures
Public
B-Cell Lymphomas Mutational Signatures
reproducible-research mutational-signatures b-cell lymphoma
Jupyter Notebook
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MIT License
•0•1•0•0•Updated Nov 26, 2022Nov 26, 2022
tandem-substitution-simulation
Public
Simulation of false tandem substitutions from input sequencing data
simulation immunoglobulin nucleotide-substitution-models base-substitution nextflow-pipeline tandem-substitution doublet-base-substitution
Python
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MIT License
•0•0•0•0•Updated Jan 9, 2022Jan 9, 2022