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@TheSEED The SEED

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    34 repositories

    • kmer-build-data

      Public
      2•1•0•0•Updated Nov 11, 2024Nov 11, 2024

    • seed_tools

      Public
      Core SEED tools, including FIG.pm
      Perl
      •1•0•0•0•Updated Nov 11, 2024Nov 11, 2024

    • seed_rast

      Public
      RAST related code exported from SEED CVS
      Perl
      •0•1•0•0•Updated Jul 18, 2024Jul 18, 2024

    • strep_repeats

      Public
      Perl
      •
      MIT License
      •0•0•0•0•Updated Jun 28, 2024Jun 28, 2024

    • genome_annotation

      Public
      Perl
      •
      MIT License
      •3•1•4•1•Updated Jun 28, 2024Jun 28, 2024

    • seed_gjo

      Public
      Gary Olsen code exported from SEED CVS
      Perl
      •1•0•0•1•Updated Jun 28, 2024Jun 28, 2024

    • seed_core

      Public
      Core code exported from SEED CVS.
      Perl
      •1•0•0•0•Updated Jun 28, 2024Jun 28, 2024

    • seed_svr

      Public
      Perl
      •1•0•0•0•Updated Mar 13, 2024Mar 13, 2024

    • typecomp

      Public
      PATRIC Type Compiler
      Perl
      •
      MIT License
      •1•0•0•0•Updated Dec 14, 2023Dec 14, 2023

    • signature_kmers

      Public
      Makefile
      •1•0•0•0•Updated Nov 1, 2023Nov 1, 2023

    • seed_config

      Public
      Module to hold /initialize SEED configuration data (FIG_Config)
      Makefile
      •1•0•0•0•Updated Sep 25, 2023Sep 25, 2023

    • sv_web_application

      Public
      SEED Viewer web application support
      Perl
      •1•0•0•0•Updated Sep 15, 2023Sep 15, 2023

    • sv_ppo

      Public
      PPO modules from the SEED project
      Perl
      •1•0•0•0•Updated Sep 15, 2023Sep 15, 2023

    • seed_db

      Public
      SEED database management code
      Perl
      •1•0•0•0•Updated Sep 15, 2023Sep 15, 2023

    • seed_viewer

      Public
      Main seedviewer code
      Perl
      •1•0•0•0•Updated Sep 15, 2023Sep 15, 2023

    • subsystem_editor

      Public
      SEED subsystem editor
      Perl
      •1•0•0•0•Updated Sep 6, 2023Sep 6, 2023

    • sprout

      Public
      The Sprout code as copied from SEED CVS
      Perl
      •1•0•0•0•Updated Sep 6, 2023Sep 6, 2023

    • seed_styles

      Public
      Common SEED web styles
      JavaScript
      •1•0•0•0•Updated Sep 6, 2023Sep 6, 2023

    • seed_legacy

      Public
      Code from the legacy SEED index.cgi
      Perl
      •1•0•0•0•Updated Sep 6, 2023Sep 6, 2023

    • seed_close_strains

      Public
      Close strains / What's Changed support
      Perl
      •0•0•0•0•Updated Sep 6, 2023Sep 6, 2023

    • coreseed

      Public
      CoreSEED specific code
      Makefile
      •0•0•0•0•Updated May 22, 2023May 22, 2023

    • app_service

      Public
      Application execution service.
      Perl
      •17•4•0•1•Updated Dec 1, 2022Dec 1, 2022

    • scan_for_matches

      Public
      The scan_for_matches bioinformatics tool.
      C
      •0•0•1•0•Updated Mar 14, 2022Mar 14, 2022

    • subsystem_extension

      Public
      SEED subsystem extension code.
      Perl
      •1•0•0•0•Updated Feb 19, 2022Feb 19, 2022

    • DBD-mysql

      Public
      MySQL driver for the Perl5 Database Interface (DBI)
      Perl
      •
      Other
      •73•0•0•0•Updated Sep 21, 2020Sep 21, 2020

    • RASTtk-Distribution

      Public
      KBase distribution module for RASTtk.
      6•13•10•0•Updated Sep 14, 2020Sep 14, 2020

    • rast_classic

      Public
      Perl
      •0•0•0•0•Updated Jan 2, 2020Jan 2, 2020

    • p3_seed_server

      Public
      Code exported from SEED CVS for use in PATRIC codebase
      Perl
      •0•0•0•0•Updated Oct 18, 2019Oct 18, 2019

    • kb_seed

      Public
      The kb_seed module contains an import of a large body of code from the SEED project. These imports are performed on a periodic basis as new features developed on the SEED side are required in the KBase codebase. This deploys both client and service libraries.
      Perl
      •
      MIT License
      •5•1•0•0•Updated Oct 24, 2017Oct 24, 2017

    • kmer_annotation_figfam

      Public
      Perl
      •
      MIT License
      •0•0•0•0•Updated Sep 22, 2017Sep 22, 2017