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    78 repositories

    • DemultiplexRawSequenceData

      Public
      A workflow automation script: demultiplex the library sequence, run quality checks, deliver to archiving and processing afterwards
      bioinformaticspython3bioinformatics-pipelinemultiqcbioinformatics-analysisbioinformatics-scriptsfastqcbioinformatics-tool
      Python
      •
      GNU General Public License v3.0
      •0•1•46•0•Updated Nov 17, 2024Nov 17, 2024

    • Nepal

      Public
      NExtflow Pipeline for AmpLicons
      Nextflow
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•11•0•Updated Nov 14, 2024Nov 14, 2024

    • INIKA

      Public
      Repository for INIKA project - Code development and sharing
      githubgittutorialrcourserstudioinikawhonet
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • NVIbatch

      Public
      Tools to facilitate the running R-scripts in batchmode at NVI
      R
      •
      Other
      •1•0•5•0•Updated Nov 13, 2024Nov 13, 2024

    • OKplan

      Public
      Tools facilitating the planning of surveillance programmes for the NFSA
      R
      •
      Other
      •1•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • NVIpretty

      Public
      Making R-output pretty in accord with NVI design
      R
      •
      Other
      •2•0•4•0•Updated Nov 13, 2024Nov 13, 2024

    • noRmvet

      Public
      R
      •
      Other
      •0•0•0•0•Updated Oct 30, 2024Oct 30, 2024

    • irida-plugin-nvi-MLST

      Public
      Java
      •0•0•7•0•Updated Oct 29, 2024Oct 29, 2024

    • shinylims

      Public
      A Python Shiny app for LIMS reporting
      Python
      •
      MIT License
      •0•0•5•0•Updated Oct 24, 2024Oct 24, 2024

    • NVIcheckmate

      Public
      Extension of the R-package checkmate for argument checking adapted to NVIverse
      R
      •
      Other
      •1•0•1•0•Updated Oct 21, 2024Oct 21, 2024

    • NVIpjsr

      Public
      Tools for working with PJSdata
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•5•0•Updated Oct 18, 2024Oct 18, 2024

    • listeriacalculator

      Public
      Listeria Calculator for raw fish
      R
      •
      Apache License 2.0
      •0•0•4•0•Updated Oct 17, 2024Oct 17, 2024

    • 2024-10-24-nvi

      Public archive
      Webpage for the Git workshop at NVI
      HTML
      •
      Other
      •0•0•0•0•Updated Oct 16, 2024Oct 16, 2024

    • cake-planning

      Public
      Cake Planning at VI
      R
      •0•0•13•0•Updated Oct 8, 2024Oct 8, 2024

    • nvi-documentation

      Public
      Tutorial page for NVI
      5•1•9•6•Updated Oct 7, 2024Oct 7, 2024

    • Assemblage

      Public
      Nextflow
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•6•0•Updated Sep 27, 2024Sep 27, 2024

    • APEC-2021-Rprepackage

      Public archive
      Prepackage for APEC-2021 analyses
      R
      •0•1•0•0•Updated Sep 24, 2024Sep 24, 2024

    • DPI

      Public
      Differences between Pairs of Isolates
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•17•0•Updated Sep 24, 2024Sep 24, 2024

    • NVIpackager

      Public
      Tools to facilitate development of NVIverse packages
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Sep 23, 2024Sep 23, 2024

    • WTE_AI_article

      Public
      White Tailed Eagle Article - place to put the cleaned scripts, functions - and supplementary material for the article
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Sep 18, 2024Sep 18, 2024

    • hafnia_reports_2024

      Public
      0•0•0•0•Updated Sep 12, 2024Sep 12, 2024

    • NVIdb

      Public
      R-package to facilitate the use of the Norwegian Veterinary Institute's databases.
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•7•0•Updated Sep 9, 2024Sep 9, 2024

    • OKcheck

      Public
      Tools to facilitate checking of the data from national surveillance programmes
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•1•0•Updated Aug 28, 2024Aug 28, 2024

    • VRE_paper

      Public
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Aug 7, 2024Aug 7, 2024

    • diplotopia

      Public
      Nextflow pipeline for analysis of diploid samples
      Nextflow
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•6•0•Updated Aug 6, 2024Aug 6, 2024

    • Saprolegnia_NVI

      Public
      Saprolegnia current research at NVI
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Aug 2, 2024Aug 2, 2024

    • licecalc

      Public
      A {golem} version with {shiny.i18n} support of the lice calculator app
      R
      •0•0•2•0•Updated Jul 27, 2024Jul 27, 2024

    • VIGASP_pipeline_overview

      Public
      0•0•1•0•Updated Jul 2, 2024Jul 2, 2024

    • .github

      Public
      0•0•0•0•Updated Jun 13, 2024Jun 13, 2024

    • Bifrost

      Public
      Nextflow
      •
      Other
      •1•2•16•0•Updated Jun 6, 2024Jun 6, 2024