Repositories list

• Documentation

  Public
  Source repository for NeuroML documentation.

  neurosciencecomputational-neurosciencecomputational-modelling+ 1standardisation

  Jupyter Notebook

  •9•11•25•2•Updated Dec 23, 2024Dec 23, 2024

• NeuroMLlite

  Public
  Work towards creating a common JSON based format for compact network specification

  Python

  •

  GNU Lesser General Public License v3.0

  •12•11•3•2•Updated Dec 19, 2024Dec 19, 2024

• pyNeuroML

  Public
  A single package in Python unifying scripts and modules for reading, writing, simulating and analysing NeuroML2/LEMS models.

  Python

  •

  GNU Lesser General Public License v3.0

  •34•38•41•5•Updated Dec 19, 2024Dec 19, 2024

• org.neuroml.import

  Public
  Import other formats into LEMS & combine with NeuroML models

  computational-neuroscienceneuromllems

  Java

  •

  GNU Lesser General Public License v3.0

  •2•1•2•0•Updated Dec 19, 2024Dec 19, 2024

• jNeuroML

  Public
  A single package (command line tool and library) in Java to validate, simulate, translate and analyse NeuroML 2 models

  Java

  •

  GNU Lesser General Public License v3.0

  •22•8•13•0•Updated Dec 19, 2024Dec 19, 2024

• org.neuroml.export

  Public
  Export from NeuroML & LEMS

  brianneuronpynn+ 3sbmllemsneuroml

  Java

  •

  GNU Lesser General Public License v3.0

  •11•8•14•2•Updated Dec 19, 2024Dec 19, 2024

• org.neuroml.model

  Public
  NeuroML v2 Java API

  Java

  •

  GNU Lesser General Public License v3.0

  •4•5•3•0•Updated Dec 19, 2024Dec 19, 2024

• org.neuroml1.model

  Public
  NeuroML v1 Java Model API

  neuroml

  Java

  •

  GNU Lesser General Public License v3.0

  •2•2•0•0•Updated Dec 18, 2024Dec 18, 2024

• org.neuroml.model.injectingplugin

  Public
  NeuroML JAXB plug-in to inject code during code generation from schema

  neuroml

  Java

  •

  GNU Lesser General Public License v3.0

  •4•1•0•0•Updated Dec 18, 2024Dec 18, 2024

• NeuroML2

  Public
  This repository hosts the NeuroML 2 Schema, the ComponentType definitions in LEMS and the core documentation of NeuroML2.

  Python

  •

  GNU Lesser General Public License v3.0

  •25•52•60•2•Updated Dec 18, 2024Dec 18, 2024

• Cvapp-NeuroMorpho.org

  Public
  Version of Cvapp as used on NeuroMorpho.org. Based on Robert Cannon's initial implementation.

  XSLT

  •6•16•0•0•Updated Jul 1, 2024Jul 1, 2024

• xppaut

  Public
  General differential equation solver and bifurcation package

  C

  •

  GNU General Public License v2.0

  •13•0•0•1•Updated Apr 17, 2024Apr 17, 2024

• xppy

  Public
  FORK of: XPPy, a Python interface for Bard Ermentrout's XPP

  Python

  •

  GNU Lesser General Public License v3.0

  •44•0•0•0•Updated Jan 29, 2024Jan 29, 2024

• n2a

  Public
  An object-oriented language for modeling large-scale neural systems, along with an IDE for writing and simulating models.

  Java

  •6•0•0•0•Updated Dec 4, 2023Dec 4, 2023

• NeuroMLWebsite

  Public
  The NeuroML homepage. Note: main NeuroML docs now at https://docs.neuroml.org & source of those at https://github.com/NeuroML/Documentation

  HTML

  •2•3•0•0•Updated Dec 4, 2023Dec 4, 2023

• NeuroMLToolbox

  Public
  NeuroML 2 toolbox for MATLAB

  1•1•0•0•Updated Nov 30, 2023Nov 30, 2023

• NeuroML_API

  Public
  C++ API for NeuroML 2

  computational-neurosciencecombinecomputational-modelling+ 2neuromlstandardisation

  C++

  •

  MIT License

  •3•2•3•0•Updated Nov 30, 2023Nov 30, 2023

• .github

  Public
  The NeuroML organisation template repository

  Python

  •0•1•0•0•Updated Sep 21, 2023Sep 21, 2023

• stochdiff

  Public
  Stochastic diffusion simulator

  Java

  •

  GNU General Public License v2.0

  •6•0•0•0•Updated Jul 8, 2022Jul 8, 2022

• NML2_LEMS_Examples

  Public
  Python

  •1•0•0•0•Updated Mar 26, 2021Mar 26, 2021

• neuroml2modelLite

  Public
  Work in progress

  Java

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Oct 13, 2020Oct 13, 2020

• neuroml2model

  Public
  Java

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Aug 16, 2018Aug 16, 2018

• NetworkShorthand

  Public
  0•1•0•0•Updated Jun 28, 2018Jun 28, 2018

• NeuroMLToPOV-Ray

  Public
  Converting NeuroML v1&2 files to POV-Ray: http://www.povray.org

  Python

  •0•0•0•0•Updated May 25, 2018May 25, 2018

• Presentations

  Public
  Presentation slides related to NeuroML & LEMS

  0•0•0•0•Updated Oct 27, 2017Oct 27, 2017

• mod2neuroml

  Public
  Pipelines for generating NeuroML2/Lems from mod files (NEURON simulator)

  0•1•1•0•Updated Aug 30, 2017Aug 30, 2017

• org.neuroml.visualiser

  Public archive
  NeuroML Web Visualiser

  JavaScript

  •0•5•0•0•Updated Jun 28, 2016Jun 28, 2016