Repositories list

• PD_multi_tissue_MR

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Oct 3, 2024Oct 3, 2024

• Parkinsons_disease_genetics

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jan 5, 2024Jan 5, 2024

• asthma_multimorbidities

  Public
  0•0•0•0•Updated May 30, 2023May 30, 2023

• khoo_et_al_somatic

  Public
  Analysis of the Connection between Germline and Somatic Processes in Lung Cancer, using a GRN and PPIN

  0•0•0•0•Updated May 4, 2023May 4, 2023

• multimorbid3D

  Public
  Python

  •5•0•0•0•Updated Apr 17, 2023Apr 17, 2023

• genetic_regulation_in_COPD

  Public
  De novo discovery of traits co-occurring with chronic obstructive pulmonary disease.

  gene-regulationgwas-catalogeqtl+ 4comorbiditiescopdcodes3dmultimorbid3d

  HTML

  •

  MIT License

  •2•0•0•0•Updated Mar 27, 2023Mar 27, 2023

• khoo_et_al_germline

  Public
  Analysis of the Germline Regulatory Connections in Lung Cancer, using CoDeS3D and a pathway analysis

  1•0•0•0•Updated Mar 14, 2023Mar 14, 2023

• PPI-network-analysis

  Public
  Clustering and centrality analysis on PPI network

  communityppinetwork-module+ 2louvain-algorithmnetwork-centrality

  Python

  •2•3•0•0•Updated Nov 22, 2022Nov 22, 2022

• alcohol-dependence

  Public
  Analysis of tissue-specific regulatory impacts of alcohol dependence-associated SNPs.

  hi-c3d-genomegene-regulatory-network+ 3eqtlalcohol-dependenceadh-genes

  HTML

  •2•3•0•0•Updated Nov 22, 2022Nov 22, 2022

• psychiatric_and_cognitive_multimorbidities

  Public
  Analysis of regulatory impacts of GWAS SNPs associated with psychiatric disorders and cognitive functioning.

  hi-ccognition3d-genome+ 9eqtladhdanxietygene-regulatory-networkmulti-morbiditybipolar-disorderdepression+ 2

  HTML

  •3•7•0•0•Updated Nov 22, 2022Nov 22, 2022

• ADH_and_ALDH_regulatory_networks

  Public
  Association analysis of ADH and ALDH gene regulatory interactions with GWAS traits.

  eqtlalcohol-dependenceadh-genes+ 4aldh-genesgene-regulationcognitiongtex-resources

  HTML

  •

  MIT License

  •2•1•0•0•Updated Nov 22, 2022Nov 22, 2022

• ACE2-regulatory-network

  Public
  Analysis of host regulatory networks that could be impacted upon infection with the Covid-19 virus

  hi-ceqtlcovid-19+ 4sars-cov-2ace2acetazolamideards

  HTML

  •1•0•0•0•Updated Nov 22, 2022Nov 22, 2022

• blood-metabolites-regulation

  Public
  bloodgene-regulationhi-c+ 33d-genomemetabolomeeqtl-mapping

  Python

  •1•1•0•0•Updated Nov 22, 2022Nov 22, 2022

• codes3d-v1

  Public
  Python

  •

  MIT License

  •1•1•0•1•Updated Nov 22, 2022Nov 22, 2022

• multimorbidity-atlas

  Public
  Pipeline to investigate multimorbidity of complex traits/phenotypes by integrating chromatin interaction and expression quantitative trait loci data.

  hi-c3d-genomeeqtl+ 2complex-traitsmulti-morbidity

  HTML

  •1•0•0•0•Updated Nov 22, 2022Nov 22, 2022

• ml_copd

  Public
  MIT License

  •0•0•0•0•Updated Nov 22, 2022Nov 22, 2022

• codes3d

  Public
  Python

  •

  MIT License

  •2•2•0•0•Updated Oct 19, 2022Oct 19, 2022

• query_disgenet

  Public
  Python

  •0•0•0•0•Updated Sep 16, 2022Sep 16, 2022

• mpra-pipeline

  Public
  Python

  •0•1•0•0•Updated Aug 2, 2022Aug 2, 2022

• pubtate

  Public
  Python

  •0•0•0•0•Updated Jun 17, 2022Jun 17, 2022

• 85_SNPs_and_2k_ld_SNP_predictor_models

  Public
  The predictor models created from the 85 SNPs and there 2k ld related SNPs

  Python

  •1•1•0•0•Updated Jun 7, 2022Jun 7, 2022

• NAFLD-comorbidity-analysis

  Public
  Python

  •0•1•0•0•Updated Mar 18, 2022Mar 18, 2022

• NAFLD-multimorbidities

  Public
  Python

  •0•0•0•0•Updated Mar 18, 2022Mar 18, 2022

• asthma-drug-response

  Public
  Python

  •0•0•0•0•Updated Feb 17, 2022Feb 17, 2022

• acne

  Public
  Python

  •0•0•0•0•Updated Nov 15, 2021Nov 15, 2021

• genetic_regulation_in_ASD

  Public
  Analysis of regulatory impacts of autism-associated SNPs on biological pathways in the fetal and adult cortex.

  gene-regulationeqtlasd+ 4snpsgwas-catalogautism-spectrum-disordergtex-resources

  HTML

  •

  MIT License

  •1•6•0•0•Updated Sep 20, 2021Sep 20, 2021

• PD_lg_predictor_analysis

  Public
  PD logistic regression predictor model analysis

  Python

  •0•0•0•0•Updated Sep 14, 2021Sep 14, 2021

• T1D_logistic_lasso_predictor

  Public
  Type 1 diabetes logistic lasso predictor

  Python

  •2•1•0•0•Updated Sep 6, 2021Sep 6, 2021

• Genetics_of_autoimmune_diseases

  Public
  Python

  •0•0•0•0•Updated Jun 5, 2021Jun 5, 2021