Repositories list

• simple-omero-client

  Public
  Maven project to easily connect to OMERO.

  mavenomerojava

  Java

  •

  GNU General Public License v2.0

  •7•9•4•1•Updated Dec 2, 2024Dec 2, 2024

• omero_macro-extensions

  Public
  imagejomeroimagej-macro

  Java

  •

  GNU General Public License v2.0

  •5•5•0•0•Updated Nov 19, 2024Nov 19, 2024

• biom3d

  Public
  Easy Volumetric Segmentation with Deep Learning

  Python

  •

  GNU General Public License v3.0

  •5•1•0•0•Updated Jul 15, 2024Jul 15, 2024

• sRNAPipe-cli

  Public
  CLI tool for bioinformatic in-depth exploration of small RNA-seq data

  rna-seqperltransposable-elements

  Perl

  •

  Academic Free License v3.0

  •0•0•1•0•Updated Apr 11, 2024Apr 11, 2024

• bioconda-recipes

  Public
  Conda recipes for the bioconda channel.

  Shell

  •

  MIT License

  •3.3k•0•0•0•Updated Apr 11, 2024Apr 11, 2024

• CLIFinder

  Public
  Perl

  •

  GNU General Public License v3.0

  •0•3•2•0•Updated Apr 10, 2024Apr 10, 2024

• sRNAPipe

  Public
  a GALAXY-based pipeline for bioinformatic in-depth exploration of small RNA-seq data

  rna-seqgalaxytransposable-elements

  HTML

  •

  Academic Free License v3.0

  •3•2•1•0•Updated Apr 9, 2024Apr 9, 2024

• biosphere-biom3d

  Public
  Appliance Biosphere for biom3d

  Shell

  •

  GNU General Public License v2.0

  •1•0•0•0•Updated Mar 27, 2024Mar 27, 2024

• biosphere-omero-server

  Public
  Biosphere appliance for OMERO server.

  Shell

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Nov 22, 2023Nov 22, 2023

• omero_batch-plugin

  Public
  imagejomeroimagej-macros+ 1imagej-plugin

  Java

  •

  GNU General Public License v2.0

  •3•4•8•0•Updated Nov 7, 2023Nov 7, 2023

• nj2_python

  Public
  NucleusJ 2.0 in Python

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Oct 31, 2023Oct 31, 2023

• NucleusJ2

  Public
  Java

  •

  GNU General Public License v3.0

  •1•0•0•1•Updated Aug 7, 2023Aug 7, 2023

• NucleusJ2-tests-images

  Public
  Images for NucleusJ2 CI/CD tests

  1•0•0•0•Updated Aug 3, 2023Aug 3, 2023

• omero-plugins-workshop

  Public
  ImageJ Macro

  •

  BSD 2-Clause "Simplified" License

  •1•0•0•0•Updated Mar 7, 2023Mar 7, 2023

• update-site-activator

  Public
  Java

  •

  BSD 2-Clause "Simplified" License

  •0•0•0•0•Updated Jan 25, 2023Jan 25, 2023

• omero-toolbox-examples

  Public
  ImageJ Macro

  •

  MIT License

  •1•1•0•0•Updated Sep 5, 2022Sep 5, 2022

• notebooks-team-probst-tatout

  Public
  0•0•0•0•Updated Feb 28, 2022Feb 28, 2022

• NucBase

  Public
  Small RNA aligner with graphical interface.

  C++

  •

  GNU Lesser General Public License v3.0

  •0•0•0•0•Updated Nov 12, 2014Nov 12, 2014