GBS-SynBioLab

All

12 repositories

MATLAB-plate-reader-analysis
Public
Script to analyse plate-reader data (OD and fluorescence) in MATLAB
MATLAB
•0•0•0•0•Updated Sep 26, 2022Sep 26, 2022
ode_composer
Public
Python
•2•1•3•0•Updated Jun 28, 2021Jun 28, 2021
Plate-reader-analysis
Public
A short code to normalise OD and fluorescence from plate reader data, and calculate growth rate
R
•1•0•0•0•Updated Nov 28, 2020Nov 28, 2020
opentrons_protocols
Public
Repo for our opentrons protocols
Python
•
GNU General Public License v3.0
•0•0•1•0•Updated Nov 23, 2020Nov 23, 2020
Whole-cell-model-Weisse-2015-
Public
MATLAB
•0•0•0•0•Updated Apr 27, 2020Apr 27, 2020
GBS-Wiki
Public
0•0•0•0•Updated Feb 28, 2020Feb 28, 2020
Gene-expression-rate-calculator
Public
Automatic calculation of gene expression rate from time-course fluorescence assays on microplate reader (bacterial cells)
MATLAB
•1•0•0•0•Updated Nov 13, 2019Nov 13, 2019
ode_composer_matlab
Public archive
ODE composer is an SBL based system identification toolbox, which builds ODE models from time-series data
optimization system-identification
MATLAB
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MIT License
•0•0•0•0•Updated Jul 25, 2019Jul 25, 2019
QuorumSensingModel
Public
MATLAB
•0•0•0•0•Updated Aug 16, 2018Aug 16, 2018
Cell_simulator
Public
Integrated development environment for the design of synthetic biological systems, from DNA sequence to systems level
synthetic-biology computer-aided-design escherichia-coli
MATLAB
•0•0•0•0•Updated Jul 9, 2018Jul 9, 2018
Growth-rate-calculator
Public
Growth rate calculator for microplate reader experiments
synthetic-biology data-analysis bacteria growth-rates microplate-reader
MATLAB
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MIT License
•1•0•0•0•Updated Jun 19, 2018Jun 19, 2018
ChemComms-calculator
Public
CAD tool that automatically identifies orthogonal chemical communication channels for the design of synthetic consortia
synthetic-biology computer-aided-design quorum-sensing synthetic-consortia
MATLAB
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MIT License
•1•1•0•0•Updated Apr 12, 2018Apr 12, 2018