Skip to content

@CyclotronResearchCentre Cyclotron Research Centre

Change the repository type filter

All

    Repositories list

    75 repositories

    • TissueW_Smoothing_demo

      Public
      Tissue weighted smoothing little demo
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 24, 2024Oct 24, 2024

    • bidsme-template

      Public
      Template notebooks for bidsification with bidsme
      Jupyter Notebook
      •0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

    • hMRI-toolbox

      Public
      A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
      MATLAB
      •
      GNU General Public License v2.0
      •44•0•0•0•Updated Oct 11, 2024Oct 11, 2024

    • bidsme

      Public
      Flexible bidsificator for multimodal datasets
      dicomeegbidsniftimri-databrainvision
      Python
      •
      GNU General Public License v2.0
      •2•8•0•0•Updated Sep 19, 2024Sep 19, 2024

    • pyActigraphy

      Public
      Python-based open source package for actigraphy data analysis
      Python
      •
      GNU General Public License v3.0
      •27•0•0•0•Updated Aug 28, 2024Aug 28, 2024

    • MPM_VisualQC

      Public
      Visual QC for MPM data
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 19, 2024Jul 19, 2024

    • mpm_bids

      Public
      MATLAB
      •0•1•0•0•Updated Jul 16, 2024Jul 16, 2024

    • PETpro

      Public
      Automated pipeline to quantify bidsified PET dataset using Logan plot model
      MATLAB
      •0•1•0•0•Updated Jul 4, 2024Jul 4, 2024

    • bids-specification

      Public
      Brain Imaging Data Structure (BIDS) Specification
      Python
      •
      Creative Commons Attribution 4.0 International
      •163•0•0•0•Updated Apr 12, 2024Apr 12, 2024

    • NODDI_singularity

      Public
      Singularity containerized version of the NODDI toolbox.
      MATLAB
      •
      GNU General Public License v3.0
      •1•5•0•0•Updated Mar 26, 2024Mar 26, 2024

    • shamo

      Public
      A tool for electromagnetic modelling of the head and sensitivity analysis.
      eegsensitivitytdcs
      Python
      •
      GNU General Public License v3.0
      •1•6•0•1•Updated Mar 20, 2024Mar 20, 2024

    • USwLesion

      Public
      Unified Segmentation for lesioned brain
      MATLAB
      •5•3•8•0•Updated Dec 15, 2023Dec 15, 2023

    • TopUp_docker_Matlab

      Public
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Dec 1, 2023Dec 1, 2023

    • OHBM2024_MMwMVML

      Public
      OHBM2024 Educational Course, Integrating multimodal data with multivariate and machine learning approaches.
      MIT License
      •0•0•0•0•Updated Nov 28, 2023Nov 28, 2023

    • bidsme_tutorial

      Public
      A set of tutorials for Bidsme usage
      Jupyter Notebook
      •0•0•0•0•Updated Nov 22, 2023Nov 22, 2023

    • Test_hMRI_processing

      Public
      Testing some functions and features from the hMRI toolbox
      MATLAB
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Oct 17, 2023Oct 17, 2023

    • MRSI_reco

      Public
      Python
      •0•0•0•0•Updated Sep 27, 2023Sep 27, 2023

    • hMRItbx_SampleDS_BIDS

      Public
      Bits of code to BIDS-ify the example data set from the hMRI toolbox
      MATLAB
      •
      GNU General Public License v3.0
      •1•0•5•1•Updated Sep 15, 2023Sep 15, 2023

    • bidsme_examples

      Public
      Example datasets for bidsme tool
      Python
      •0•0•0•0•Updated Aug 7, 2023Aug 7, 2023

    • hMRI-toolbox_redirect

      Public
      Redirecting SPM toolbox to another folder.
      MATLAB
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated May 16, 2023May 16, 2023

    • FASST

      Public
      FASST, aka. fMRI Artefact rejection and Sleep Scoring Toolbox, public distribution with the latest updates.
      MATLAB
      •
      Other
      •18•19•4•1•Updated Mar 5, 2023Mar 5, 2023

    • SPM_ClusterSizeThreshold

      Public
      SPM Cluster Size Threshold estimation
      MATLAB
      •
      GNU General Public License v2.0
      •1•13•1•0•Updated Feb 6, 2023Feb 6, 2023

    • BrainWeb-tDCS

      Public
      Code associated with this pre-print https://hdl.handle.net/2268/294662
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 11, 2023Jan 11, 2023

    • spm_auto_reorient

      Public
      A few routines to perform "auto reorient" in SPM
      MATLAB
      •
      GNU General Public License v2.0
      •10•15•0•1•Updated Jan 11, 2023Jan 11, 2023

    • diffeo-segment

      Public
      Diffeomorphic group-wise registration and segmentation
      MATLAB
      •
      GNU General Public License v3.0
      •7•0•0•0•Updated Nov 17, 2022Nov 17, 2022

    • Alzheimer-Classification

      Public
      Jupyter Notebook
      •2•0•0•0•Updated May 20, 2022May 20, 2022

    • tapas

      Public
      TAPAS - Translational Algorithms for Psychiatry-Advancing Science
      MATLAB
      •
      GNU General Public License v3.0
      •90•0•0•0•Updated May 3, 2022May 3, 2022

    • check_my_code

      Public
      Because we all need pointers when it comes to make our code better.
      MATLAB
      •
      GNU General Public License v3.0
      •9•0•0•0•Updated Apr 3, 2022Apr 3, 2022

    • MRIquality

      Public
      Tools for routine quality assurance and post-acquisition MRI data quality control
      MATLAB
      •4•8•0•0•Updated Sep 20, 2021Sep 20, 2021

    • bids-matlab

      Public
      MATLAB / Octave tools for BIDS datasets
      MATLAB
      •
      GNU General Public License v3.0
      •32•0•0•0•Updated May 29, 2021May 29, 2021