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    408 repositories

    • visual_behavior_analysis

      Public
      Python package for analyzing behavioral data for Brain Observatory: Visual Behavior
      pythonbehaviorneurosciencepsychologypsychophysics
      Jupyter Notebook
      •
      Other
      •6•22•65•6•Updated Dec 28, 2024Dec 28, 2024

    • TEM_comms

      Public
      Pigeon messages for the next generation TEM imaging system
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•1•0•Updated Dec 25, 2024Dec 25, 2024

    • vis

      Public
      Typescript packages for building big-data visualization tools & components, with examples for a variety of common data types & formats
      TypeScript
      •
      BSD 3-Clause "New" or "Revised" License
      •0•5•0•4•Updated Dec 24, 2024Dec 24, 2024

    • aibs-informatics-aws-utils

      Public
      Library of generic Python AWS utils used by the AIBS Informatics "Marmot" team
      pythonawsaibs-informatics
      Python
      •
      Other
      •0•1•1•0•Updated Dec 23, 2024Dec 23, 2024

    • aibs-informatics-cdk-lib

      Public
      Library for AWS CDK Constructs related to AIBS Informatics Services
      aibs-informatics
      Python
      •
      Other
      •0•1•0•1•Updated Dec 23, 2024Dec 23, 2024

    • aibs-informatics-core

      Public
      Core library to be used as foundation across multiple projects
      aibs-informatics
      Python
      •
      Other
      •0•2•0•1•Updated Dec 23, 2024Dec 23, 2024

    • aibs-informatics-aws-lambda

      Public
      AWS Lambda library for AIBS Informatics lambda functions
      aibs-informatics
      Python
      •
      Other
      •0•1•0•0•Updated Dec 23, 2024Dec 23, 2024

    • deep-neurographs

      Public
      Deep-Neurographs is a Python module that utilizes machine learning to detect and correct false splits in a predicted neuron segmentation.
      Jupyter Notebook
      •
      MIT License
      •0•3•0•0•Updated Dec 23, 2024Dec 23, 2024

    • modular-networks-theory

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Dec 23, 2024Dec 23, 2024

    • biofile-finder

      Public
      An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.
      TypeScript
      •
      BSD 3-Clause "New" or "Revised" License
      •1•4•60•6•Updated Dec 21, 2024Dec 21, 2024

    • aibs-informatics-test-resources

      Public
      Python test utility package
      aibs-informatics
      Python
      •
      Other
      •0•1•0•0•Updated Dec 21, 2024Dec 21, 2024

    • np_codeocean

      Public
      Tools for uploading and interacting with Mindscope Neuropixels experiments on Code Ocean
      Python
      •2•0•1•0•Updated Dec 20, 2024Dec 20, 2024

    • scrattch

      Public
      Single cell RNA-seq analysis for transcriptomic type characterization
      rumbrellatranscriptomicsscrattch
      R
      •
      Other
      •3•31•0•0•Updated Dec 20, 2024Dec 20, 2024

    • scrattch.taxonomy

      Public
      Allen Institute Taxonomy building R package
      HTML
      •1•1•9•1•Updated Dec 20, 2024Dec 20, 2024

    • txtox

      Public
      Experiments to relate gene expression and anatomical location
      Jupyter Notebook
      •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

    • scrattch.mapping

      Public
      Genearlized mapping scripts for RNA-seq and Patch-seq data
      R
      •2•10•8•1•Updated Dec 20, 2024Dec 20, 2024

    • EM_MC_paper_figures

      Public
      Notebooks for analyzing and generating figures for EM MC paper
      Jupyter Notebook
      •
      Other
      •0•1•0•0•Updated Dec 20, 2024Dec 20, 2024

    • ACE

      Public
      R Shiny app for comparison of annotations (e.g., cell type assignments)
      R
      •
      Other
      •1•1•5•0•Updated Dec 20, 2024Dec 20, 2024

    • MIES

      Public
      Multichannel Igor Electrophysiology Suite
      electrophysiologyigor-prosupported
      IGOR Pro
      •
      Other
      •9•25•289•8•Updated Dec 20, 2024Dec 20, 2024

    • ophys_etl_pipelines

      Public
      Pipelines and modules for processing optical physiology data
      Python
      •
      Other
      •5•9•76•2•Updated Dec 20, 2024Dec 20, 2024

    • asap-modules

      Public
      Shared repo for EM connectomics and Array Tomography render based image processing modules
      Python
      •
      BSD 2-Clause "Simplified" License
      •4•14•13•1•Updated Dec 20, 2024Dec 20, 2024

    • npc_sessions_cache

      Public
      Scripts, notebooks and plots that operate on NWB or NWB-like objects from `npc_sessions` in the cloud.
      Jupyter Notebook
      •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

    • npc_mvr

      Public
      Tools for reading raw video data from MindScope Neuropixels experiments, compatible with data in the cloud.
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

    • dynamic_routing_analysis

      Public
      Tools for accessing, processing and presenting data from Dynamic Routing experiments.
      Jupyter Notebook
      •0•1•0•0•Updated Dec 20, 2024Dec 20, 2024

    • cell_type_mapper

      Public
      Repository for storing prototype functionality implementations for the BKP
      Python
      •
      Other
      •4•19•5•2•Updated Dec 19, 2024Dec 19, 2024

    • merquaco-pc-test

      Public
      Jupyter Notebook
      •
      Other
      •3•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • npc_lims

      Public
      Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.
      Python
      •
      MIT License
      •0•0•3•0•Updated Dec 19, 2024Dec 19, 2024

    • abc_atlas_access

      Public
      Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas
      Jupyter Notebook
      •
      Other
      •22•55•13•4•Updated Dec 19, 2024Dec 19, 2024

    • cplAE_MET

      Public
      Coupled autoencoder extension for MET analysis.
      Jupyter Notebook
      •0•1•0•0•Updated Dec 19, 2024Dec 19, 2024

    • mtrain_regimens

      Public
      Repository to track training stages and regimens for visual behavior
      Python
      •
      Other
      •4•3•14•0•Updated Dec 19, 2024Dec 19, 2024