feat: configuration for etl run with gentropy

[project-defiant]

Context

We want to be able to run the genetics etl dag with two modes:

• standalone
• as a part of unified pipeline

This PR attempts to create a configuration for the unified pipeline run with genetices etl.

Things implemented

• Addition of biosamples step to the PIS config (required for biosample_index step in genetics etl)
• Set up input and output paths to match the platform release path
• Update of etl_search dependencies
• Set up input dependencies between (platform, PIS) -> genetics ETL
  • etl_target -> genetics_gene_index
  • pis_biosamples -> genetics_biosample_index
  • etl_diseases -> genetics_study_index
  • pis_evidence -> genetics_variant_conversion
  • pis_pharmacogenomics -> genetics_variant_conversion
  • etl_interactions -> genetics_l2g_train`
• Set up output dependencies between (gentropy ETL) -> platform ETL
  • etl_evidence -> requires gentropy_evidence to be stored under the pis_evidence output directory
  • etl_search -> requires gentropy_variant_index

[DSuveges]

Wow, this is a very comprehensive effort.